Variant report

Variant	rs10238912
Chromosome Location	chr7:79669349-79669350
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10231925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237290	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237415	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10247323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974166	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11977309	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977332	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28630699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34872162	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35802637	0.90[AFR][1000 genomes]
rs55687904	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56330158	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56361294	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56761500	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57082352	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57137296	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57291254	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58876952	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59312847	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61390031	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61586173	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73374533	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73374541	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73374589	0.89[AFR][1000 genomes]
rs73374591	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73376508	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376538	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376541	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376565	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73378605	0.83[AMR][1000 genomes]
rs73708417	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708491	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708493	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607676	chr7:79636682-79687844	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv818527	chr7:79636682-79687844	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607677	chr7:79636682-79693050	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv470344	chr7:79659914-79701003	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79668600-79669400	Enhancers	Fetal Lung	lung
2	chr7:79668800-79669400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr7:79669200-79670000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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