Variant report

Variant	rs73378605
Chromosome Location	chr7:79747540-79747541
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10231925	0.83[AMR][1000 genomes]
rs10237290	0.83[AMR][1000 genomes]
rs10237415	0.83[AMR][1000 genomes]
rs10238912	0.83[AMR][1000 genomes]
rs10242482	0.83[AMR][1000 genomes]
rs10247323	0.83[AMR][1000 genomes]
rs10260857	0.83[AMR][1000 genomes]
rs11974166	1.00[AMR][1000 genomes]
rs11977309	0.83[AMR][1000 genomes]
rs11977332	0.83[AMR][1000 genomes]
rs12333681	0.83[AMR][1000 genomes]
rs28630699	0.83[AMR][1000 genomes]
rs34872162	0.83[AMR][1000 genomes]
rs55687904	1.00[AMR][1000 genomes]
rs56330158	1.00[AMR][1000 genomes]
rs56361294	1.00[AMR][1000 genomes]
rs56761500	1.00[AMR][1000 genomes]
rs57082352	1.00[AMR][1000 genomes]
rs57137296	1.00[AMR][1000 genomes]
rs57291254	0.83[AMR][1000 genomes]
rs58876952	0.83[AMR][1000 genomes]
rs59312847	0.83[AMR][1000 genomes]
rs61099972	0.83[AFR][1000 genomes]
rs61390031	0.83[AMR][1000 genomes]
rs61586173	0.83[AMR][1000 genomes]
rs73374533	1.00[AMR][1000 genomes]
rs73374541	1.00[AMR][1000 genomes]
rs73374591	1.00[AMR][1000 genomes]
rs73376508	0.83[AMR][1000 genomes]
rs73376538	0.83[AMR][1000 genomes]
rs73376541	0.83[AMR][1000 genomes]
rs73376565	1.00[AMR][1000 genomes]
rs73708417	0.83[AMR][1000 genomes]
rs73708491	1.00[AMR][1000 genomes]
rs73708493	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79744200-79748600	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:79744200-79755600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:79744400-79752200	Weak transcription	Brain Substantia Nigra	brain
4	chr7:79747200-79752800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links