Variant report

Variant	rs57291254
Chromosome Location	chr7:79692388-79692389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10231925	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237290	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237415	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238912	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242482	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10247323	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260857	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974166	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11977309	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977332	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333681	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28630699	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34872162	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35802637	0.97[AFR][1000 genomes]
rs55687904	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56330158	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56361294	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56761500	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57082352	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57137296	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58876952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59312847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61390031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61586173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73374533	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73374541	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73374589	0.95[AFR][1000 genomes]
rs73374591	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73376508	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376565	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73378605	0.83[AMR][1000 genomes]
rs73708417	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708491	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73708493	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607677	chr7:79636682-79693050	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv470344	chr7:79659914-79701003	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79690200-79696400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:79691200-79692400	Weak transcription	Fetal Lung	lung

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