Variant report

Variant	rs1024004
Chromosome Location	chr11:46193038-46193039
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr11:46192830-46193044	T-47D	breast:	n/a	n/a
2	FOXA1	chr11:46192400-46193044	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46191150..46193434-chr11:46195184..46197537,2	MCF-7	breast:
2	chr11:46190216..46193162-chr11:46196948..46199008,3	K562	blood:

Variant related genes	Relation type
ENSG00000255314	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10734541	1.00[ASN][1000 genomes]
rs10769193	1.00[ASN][1000 genomes]
rs10769198	1.00[CHB][hapmap]
rs10838571	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827687	1.00[CHB][hapmap]
rs1401421	1.00[CHB][hapmap]
rs1490087	1.00[CHB][hapmap]
rs1994599	1.00[CHB][hapmap]
rs2029482	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2029483	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130469	1.00[CHB][hapmap]
rs2860433	1.00[CHB][hapmap]
rs2863725	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2902551	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2946005	1.00[CHB][hapmap]
rs2959097	1.00[CHB][hapmap]
rs4387328	1.00[CEU][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756056	1.00[CHB][hapmap]
rs4756064	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61884127	0.83[EUR][1000 genomes]
rs61884129	1.00[ASN][1000 genomes]
rs6485666	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485670	1.00[CHB][hapmap]
rs7121210	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7397035	1.00[CHB][hapmap]
rs7925296	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925932	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs923531	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9734613	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051344	chr11:46188818-46306447	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
2	nsv541028	chr11:46188818-46306447	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
3	esv3329186	chr11:46192979-46193288	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46192000-46193200	Enhancers	Liver	Liver

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