Variant report

Variant	rs11827687
Chromosome Location	chr11:46028684-46028685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45986022..45987159-chr11:46027654..46029158,13	K562	blood:
2	chr11:46024538..46028805-chr11:46032055..46036011,4	K562	blood:
3	chr11:46028036..46029889-chr11:46143429..46146254,2	K562	blood:
4	chr11:45893895..45894589-chr11:46027736..46028724,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10128629	1.00[ASN][1000 genomes]
rs1024004	1.00[CHB][hapmap]
rs1038733	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10734539	1.00[ASN][1000 genomes]
rs10734540	1.00[ASN][1000 genomes]
rs10742773	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769177	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10838528	1.00[ASN][1000 genomes]
rs10838558	1.00[CEU][hapmap]
rs10838563	1.00[ASN][1000 genomes]
rs10838564	1.00[CEU][hapmap]
rs11038827	1.00[ASN][1000 genomes]
rs11820849	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11820877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827732	1.00[ASN][1000 genomes]
rs11828167	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292649	1.00[ASN][1000 genomes]
rs1401420	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1401421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490082	1.00[ASN][1000 genomes]
rs1490087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1565412	1.00[CEU][hapmap]
rs16938429	1.00[CEU][hapmap];0.80[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938437	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907003	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1973721	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1994599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2013010	1.00[CEU][hapmap]
rs2130469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2130470	1.00[ASN][1000 genomes]
rs2130471	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2130473	1.00[ASN][1000 genomes]
rs2171895	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2860376	0.90[AMR][1000 genomes]
rs2860433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2863714	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28668543	1.00[ASN][1000 genomes]
rs2932510	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2932512	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2932515	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2932516	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2945996	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2945998	1.00[CEU][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2946000	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2946002	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2946005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2946008	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2946009	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959082	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2959083	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2959085	1.00[CEU][hapmap]
rs2959088	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2959089	1.00[ASN][1000 genomes]
rs2959095	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2959103	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959104	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs3929339	1.00[CEU][hapmap]
rs4237661	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4281461	1.00[ASN][1000 genomes]
rs4756042	1.00[CEU][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756043	0.90[EUR][1000 genomes]
rs4756048	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4756057	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4756058	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4756059	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs55945697	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56288505	1.00[ASN][1000 genomes]
rs61652532	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61882507	1.00[ASN][1000 genomes]
rs61882508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882510	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882513	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882514	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882534	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882535	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882536	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882538	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882541	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882542	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882543	1.00[ASN][1000 genomes]
rs61882544	1.00[ASN][1000 genomes]
rs61882545	1.00[ASN][1000 genomes]
rs61882546	1.00[ASN][1000 genomes]
rs61882547	1.00[ASN][1000 genomes]
rs61884152	1.00[ASN][1000 genomes]
rs6485660	1.00[CEU][hapmap]
rs6485663	1.00[CEU][hapmap]
rs6485664	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7103299	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7106689	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7111900	1.00[ASN][1000 genomes]
rs7120227	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7125387	1.00[ASN][1000 genomes]
rs7129942	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7130282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73452216	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7397035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7478883	1.00[ASN][1000 genomes]
rs7924996	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7932895	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934407	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7934572	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934681	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937896	1.00[CEU][hapmap]
rs7942083	1.00[CEU][hapmap]
rs7942246	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7943416	1.00[ASN][1000 genomes]
rs7946524	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs923531	1.00[CHB][hapmap]
rs939106	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522527	chr11:46024183-46033104	Enhancers Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv972948	chr11:46025325-46031491	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46001400-46070400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:46002000-46042400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:46002000-46056200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:46012800-46031000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:46012800-46062800	Weak transcription	GM12878-XiMat	blood
6	chr11:46016200-46048200	Weak transcription	Esophagus	oesophagus
7	chr11:46016800-46044000	Weak transcription	Primary T cells from cord blood	blood
8	chr11:46017000-46032000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:46022000-46033600	Weak transcription	Primary B cells from cord blood	blood
10	chr11:46022000-46074600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:46023000-46029000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr11:46023400-46038200	Weak transcription	A549	lung
13	chr11:46023400-46041800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:46023400-46047800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:46023400-46048200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:46023600-46041600	Weak transcription	Ovary	ovary
17	chr11:46023600-46046400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr11:46024800-46042600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr11:46025600-46029200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr11:46025600-46031000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr11:46025600-46033600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:46025600-46033600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:46025600-46041800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr11:46025600-46047400	Weak transcription	HSMMtube	muscle
25	chr11:46025600-46056200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:46025800-46031000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:46026000-46030800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:46026000-46031200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:46026000-46032000	Weak transcription	Colon Smooth Muscle	Colon
30	chr11:46026200-46033400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:46026200-46055600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:46026400-46032400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:46026400-46033800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:46026400-46034000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr11:46026400-46047800	Weak transcription	HSMM	muscle
36	chr11:46026600-46031200	Weak transcription	K562	blood
37	chr11:46026600-46031400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:46026800-46033600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr11:46027800-46031200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr11:46027800-46031400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:46028000-46033400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr11:46028200-46031000	Weak transcription	Fetal Lung	lung
43	chr11:46028200-46033000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:46028400-46030800	Weak transcription	Fetal Heart	heart
45	chr11:46028600-46033400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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