Variant report

Variant	rs10838564
Chromosome Location	chr11:46127313-46127314
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46126888..46128874-chr11:46258941..46261512,2	K562	blood:
2	chr11:46124972..46127798-chr11:46141820..46144494,2	MCF-7	breast:
3	chr11:46126556..46131545-chr11:46139597..46143863,6	K562	blood:
4	chr11:46127283..46129458-chr11:46315355..46317255,2	K562	blood:
5	chr11:46125754..46127349-chr11:46143825..46145810,2	MCF-7	breast:
6	chr11:45867411..45869543-chr11:46126573..46129162,2	K562	blood:

Variant related genes	Relation type
ENSG00000254639	Chromatin interaction
ENSG00000157613	Chromatin interaction
ENSG00000135365	Chromatin interaction
ENSG00000121671	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1038733	1.00[CEU][hapmap]
rs10742773	1.00[CEU][hapmap]
rs10769186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769191	0.81[CHD][hapmap]
rs10838547	0.81[ASN][1000 genomes]
rs10838551	0.90[JPT][hapmap];0.86[MEX][hapmap];0.82[ASN][1000 genomes]
rs10838552	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10838555	0.82[ASN][1000 genomes]
rs10838558	1.00[CEU][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838559	0.90[JPT][hapmap];0.86[MEX][hapmap];0.82[ASN][1000 genomes]
rs10838560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10838562	0.99[ASN][1000 genomes]
rs10838565	0.98[ASN][1000 genomes]
rs10838566	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[ASN][1000 genomes]
rs10838567	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[ASN][1000 genomes]
rs11038761	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.99[ASN][1000 genomes]
rs11038767	0.99[ASN][1000 genomes]
rs11038768	0.99[ASN][1000 genomes]
rs11038772	0.94[ASN][1000 genomes]
rs11820849	1.00[CEU][hapmap]
rs11827687	1.00[CEU][hapmap]
rs12283184	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs12575808	0.98[ASN][1000 genomes]
rs13377242	0.99[ASN][1000 genomes]
rs1401421	1.00[CEU][hapmap]
rs1490087	1.00[CEU][hapmap]
rs1565412	1.00[CEU][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16938429	1.00[CEU][hapmap]
rs16938437	1.00[CEU][hapmap]
rs1907003	1.00[CEU][hapmap]
rs1994599	1.00[CEU][hapmap]
rs2013010	1.00[CEU][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2130469	1.00[CEU][hapmap]
rs2130471	1.00[CEU][hapmap]
rs2130475	0.99[ASN][1000 genomes]
rs2130476	0.99[ASN][1000 genomes]
rs2171895	1.00[CEU][hapmap]
rs2220546	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2860433	1.00[CEU][hapmap]
rs2863714	1.00[CEU][hapmap]
rs2932510	1.00[CEU][hapmap]
rs2932512	1.00[CEU][hapmap]
rs2932513	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2932514	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2932515	1.00[CEU][hapmap]
rs2932516	1.00[CEU][hapmap]
rs2945998	1.00[CEU][hapmap]
rs2946002	1.00[CEU][hapmap]
rs2946005	1.00[CEU][hapmap]
rs2946009	1.00[CEU][hapmap]
rs2959082	1.00[CEU][hapmap]
rs2959083	1.00[CEU][hapmap]
rs2959085	1.00[CEU][hapmap]
rs2959086	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2959095	1.00[CEU][hapmap]
rs2959096	1.00[CEU][hapmap]
rs2959097	1.00[CEU][hapmap]
rs2959103	1.00[CEU][hapmap]
rs2959104	1.00[CEU][hapmap]
rs3736508	0.95[JPT][hapmap]
rs3929339	0.88[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4237661	1.00[CEU][hapmap]
rs4755347	0.81[ASN][1000 genomes]
rs4756042	1.00[CEU][hapmap]
rs4756048	1.00[CEU][hapmap]
rs4756054	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4756056	1.00[CEU][hapmap]
rs4756057	1.00[CEU][hapmap]
rs4756058	1.00[CEU][hapmap]
rs4756059	1.00[CEU][hapmap]
rs6485655	0.95[JPT][hapmap]
rs6485660	1.00[CEU][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6485663	1.00[CEU][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6485664	1.00[CEU][hapmap]
rs7103299	1.00[CEU][hapmap]
rs7106689	1.00[CEU][hapmap]
rs7120227	1.00[CEU][hapmap]
rs7129942	1.00[CEU][hapmap]
rs7397035	1.00[CEU][hapmap]
rs7924996	1.00[CEU][hapmap]
rs7932691	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934407	1.00[CEU][hapmap]
rs7934572	1.00[CEU][hapmap]
rs7934681	1.00[CEU][hapmap]
rs7937896	1.00[CEU][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7942083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942246	1.00[CEU][hapmap]
rs7946524	1.00[CEU][hapmap]
rs939105	0.95[MEX][hapmap]
rs939106	1.00[CEU][hapmap]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46079000-46128200	Weak transcription	Aorta	Aorta
2	chr11:46094400-46128200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:46106400-46131800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:46111600-46130400	Weak transcription	Fetal Stomach	stomach
5	chr11:46112600-46130400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:46118800-46128200	Weak transcription	Spleen	Spleen
7	chr11:46119000-46128200	Weak transcription	Gastric	stomach
8	chr11:46119000-46131200	Weak transcription	Esophagus	oesophagus
9	chr11:46121200-46127800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:46121200-46128200	Weak transcription	Right Ventricle	heart
11	chr11:46121400-46128200	Weak transcription	HSMM	muscle
12	chr11:46121800-46139200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:46122000-46139600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:46122400-46129800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:46122600-46127600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr11:46122600-46127800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr11:46122600-46128000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:46122600-46131200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:46122600-46135400	Weak transcription	Primary B cells from cord blood	blood
20	chr11:46122600-46140400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:46122600-46140400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr11:46122800-46127600	Weak transcription	Brain Anterior Caudate	brain
23	chr11:46122800-46127800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:46122800-46127800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:46122800-46128200	Weak transcription	NHDF-Ad	bronchial
26	chr11:46122800-46130400	Weak transcription	A549	lung
27	chr11:46122800-46134200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:46122800-46134200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr11:46122800-46134400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:46123400-46127800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr11:46123400-46137400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr11:46123800-46138200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr11:46124200-46129400	Enhancers	Fetal Heart	heart
34	chr11:46125600-46128400	Enhancers	Fetal Lung	lung
35	chr11:46125600-46128600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:46125800-46128800	Enhancers	Brain Hippocampus Middle	brain
37	chr11:46125800-46129000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:46125800-46129400	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr11:46126000-46127600	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr11:46126000-46129000	Enhancers	Brain Substantia Nigra	brain
41	chr11:46126200-46129000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:46126200-46129600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:46126200-46129800	Flanking Active TSS	K562	blood
44	chr11:46126200-46134200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr11:46126400-46127400	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr11:46126400-46128200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:46126400-46128400	Enhancers	Brain Angular Gyrus	brain
48	chr11:46126400-46129000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:46126600-46127400	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr11:46126600-46127400	Enhancers	Colon Smooth Muscle	Colon

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