Variant report

Variant	rs10838566
Chromosome Location	chr11:46134807-46134808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr11:46134574-46134896	K562	blood:	n/a	n/a
2	SIN3A	chr11:46134561-46134857	H1-hESC	embryonic stem cell:	n/a	n/a
3	CREB1	chr11:46134617-46134979	GM12878	blood:	n/a	n/a
4	ELF1	chr11:46134321-46135074	MCF-7	breast:	n/a	n/a
5	MAFK	chr11:46134558-46135130	IMR90	lung:	n/a	chr11:46134973-46134989 chr11:46134977-46134991 chr11:46134974-46134985 chr11:46134974-46134994 chr11:46134976-46134992 chr11:46134973-46134988
6	CEBPB	chr11:46134587-46134889	HepG2	liver:	n/a	n/a
7	ZNF143	chr11:46134308-46134979	K562	blood:	n/a	chr11:46134748-46134757 chr11:46134689-46134698 chr11:46134750-46134759 chr11:46134687-46134705 chr11:46134741-46134759 chr11:46134694-46134709 chr11:46134691-46134710
8	SP1	chr11:46134429-46135011	HCT-116	colon:	n/a	n/a
9	CREB1	chr11:46134563-46134837	H1-hESC	embryonic stem cell:	n/a	n/a
10	ELF1	chr11:46134446-46134886	K562	blood:	n/a	n/a
11	ELF1	chr11:46134451-46135041	HCT-116	colon:	n/a	n/a
12	MAX	chr11:46134666-46134851	H1-hESC	embryonic stem cell:	n/a	n/a
13	POU2F2	chr11:46134582-46134959	GM12878	blood:	n/a	n/a
14	GATA3	chr11:46134592-46134903	MCF-7	breast:	n/a	n/a
15	JUND	chr11:46134578-46134895	K562	blood:	n/a	n/a
16	FOS	chr11:46134560-46134854	MCF10A-Er-Src	breast:	n/a	n/a
17	ELF1	chr11:46134477-46134953	SK-N-SH	brain:	n/a	n/a
18	TBP	chr11:46134532-46134875	K562	blood:	n/a	n/a
19	MAFK	chr11:46134593-46135135	HepG2	liver:	n/a	chr11:46134973-46134989 chr11:46134977-46134991 chr11:46134974-46134985 chr11:46134974-46134994 chr11:46134976-46134992 chr11:46134973-46134988
20	USF2	chr11:46134556-46134882	Hela-S3	cervix:	n/a	n/a
21	HCFC1	chr11:46134428-46134959	K562	blood:	n/a	n/a
22	CEBPB	chr11:46134447-46135046	HCT-116	colon:	n/a	n/a
23	MAFK	chr11:46134546-46135147	K562	blood:	n/a	chr11:46134973-46134989 chr11:46134977-46134991 chr11:46134974-46134985 chr11:46134974-46134994 chr11:46134976-46134992 chr11:46134973-46134988
24	SIX5	chr11:46134467-46134984	A549	lung:	n/a	chr11:46134748-46134757 chr11:46134906-46134922 chr11:46134730-46134739 chr11:46134750-46134759
25	CEBPB	chr11:46134562-46134889	A549	lung:	n/a	n/a
26	ETS1	chr11:46134508-46134924	GM12878	blood:	n/a	chr11:46134685-46134698 chr11:46134686-46134699 chr11:46134747-46134760
27	SIX5	chr11:46134448-46134889	K562	blood:	n/a	chr11:46134748-46134757 chr11:46134730-46134739 chr11:46134750-46134759
28	MYC	chr11:46134557-46134843	MCF10A-Er-Src	breast:	n/a	n/a
29	NFYA	chr11:46134560-46134868	K562	blood:	n/a	n/a
30	CREB1	chr11:46134608-46134907	HepG2	liver:	n/a	n/a
31	MAFF	chr11:46134555-46135159	K562	blood:	n/a	chr11:46134977-46134991 chr11:46134971-46134989
32	CREB1	chr11:46134450-46134990	GM12878	blood:	n/a	n/a
33	ELF1	chr11:46134510-46134813	HepG2	liver:	n/a	n/a
34	ZNF143	chr11:46134491-46134969	Hela-S3	cervix:	n/a	chr11:46134748-46134757 chr11:46134689-46134698 chr11:46134750-46134759 chr11:46134687-46134705 chr11:46134741-46134759 chr11:46134694-46134709 chr11:46134691-46134710
35	MAFK	chr11:46134532-46135137	H1-hESC	embryonic stem cell:	n/a	chr11:46134973-46134989 chr11:46134977-46134991 chr11:46134974-46134985 chr11:46134974-46134994 chr11:46134976-46134992 chr11:46134973-46134988
36	YY1	chr11:46134505-46134913	ECC-1	luminal epithelium:	n/a	n/a
37	ELF1	chr11:46134539-46134882	A549	lung:	n/a	n/a
38	ETS1	chr11:46134457-46134932	A549	lung:	n/a	chr11:46134685-46134698 chr11:46134686-46134699 chr11:46134747-46134760
39	SIX5	chr11:46134522-46134945	GM12878	blood:	n/a	chr11:46134748-46134757 chr11:46134906-46134922 chr11:46134730-46134739 chr11:46134750-46134759
40	CEBPB	chr11:46134519-46134960	ECC-1	luminal epithelium:	n/a	n/a
41	CEBPB	chr11:46134542-46134925	K562	blood:	n/a	n/a
42	MAFK	chr11:46134506-46135157	Hela-S3	cervix:	n/a	chr11:46134973-46134989 chr11:46134977-46134991 chr11:46134974-46134985 chr11:46134974-46134994 chr11:46134976-46134992 chr11:46134973-46134988
43	ETS1	chr11:46134321-46134985	A549	lung:	n/a	chr11:46134685-46134698 chr11:46134686-46134699 chr11:46134747-46134760
44	ELF1	chr11:46134477-46134862	K562	blood:	n/a	n/a
45	IRF1	chr11:46134601-46134883	K562	blood:	n/a	chr11:46134782-46134789
46	CEBPB	chr11:46134552-46134910	K562	blood:	n/a	n/a
47	HCFC1	chr11:46134123-46135279	Hela-S3	cervix:	n/a	n/a
48	YY1	chr11:46134491-46134879	GM12878	blood:	n/a	n/a
49	TBP	chr11:46134485-46134936	Hela-S3	cervix:	n/a	n/a
50	SIX5	chr11:46134512-46134964	K562	blood:	n/a	chr11:46134748-46134757 chr11:46134906-46134922 chr11:46134730-46134739 chr11:46134750-46134759

Variant related genes	Relation type
ENSG00000263539	TF binding region
ENSG00000254653	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10769186	0.98[ASN][1000 genomes]
rs10838542	0.85[AMR][1000 genomes]
rs10838547	0.80[ASN][1000 genomes]
rs10838551	0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10838552	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs10838555	0.81[ASN][1000 genomes]
rs10838558	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs10838559	0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10838560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10838562	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10838564	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[ASN][1000 genomes]
rs10838565	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838567	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838569	0.95[YRI][hapmap];0.87[AFR][1000 genomes]
rs11038749	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11038761	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11038767	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11038768	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11038772	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12283184	0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12575808	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377242	0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1565412	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2013010	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2130475	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2130476	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2220546	0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2932514	0.80[ASN][1000 genomes]
rs2959086	0.81[ASN][1000 genomes]
rs3736508	0.95[JPT][hapmap];0.85[MEX][hapmap]
rs3929339	0.90[JPT][hapmap];0.85[MEX][hapmap];0.81[ASN][1000 genomes]
rs4755347	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4756054	0.81[ASN][1000 genomes]
rs6485655	0.95[JPT][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes]
rs6485660	0.90[JPT][hapmap]
rs6485663	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs7932691	0.98[ASN][1000 genomes]
rs7937896	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs7942083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs939105	0.85[MEX][hapmap]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46121800-46139200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:46122000-46139600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:46122600-46135400	Weak transcription	Primary B cells from cord blood	blood
4	chr11:46122600-46140400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:46122600-46140400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:46123400-46137400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:46123800-46138200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr11:46127000-46135800	Weak transcription	Left Ventricle	heart
9	chr11:46127000-46139400	Weak transcription	NHEK	skin
10	chr11:46127000-46140000	Weak transcription	Osteobl	bone
11	chr11:46127000-46140800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:46127000-46140800	Weak transcription	Pancreas	Pancrea
13	chr11:46127200-46135800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:46127200-46136000	Weak transcription	Dnd41	blood
15	chr11:46127200-46138200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:46127200-46139600	Weak transcription	Right Atrium	heart
17	chr11:46127200-46140600	Weak transcription	Small Intestine	intestine
18	chr11:46128400-46138800	Weak transcription	NHDF-Ad	bronchial
19	chr11:46128400-46139400	Weak transcription	Thymus	Thymus
20	chr11:46128600-46135600	Weak transcription	Ovary	ovary
21	chr11:46128600-46138200	Weak transcription	Spleen	Spleen
22	chr11:46128600-46139800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:46128600-46140400	Weak transcription	Right Ventricle	heart
24	chr11:46128800-46135600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:46128800-46135600	Weak transcription	Fetal Brain Female	brain
26	chr11:46129000-46135400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:46129000-46135600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:46129000-46135600	Weak transcription	Fetal Brain Male	brain
29	chr11:46129000-46135600	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:46129000-46139000	Weak transcription	NHLF	lung
31	chr11:46129000-46139600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:46129000-46140200	Weak transcription	HSMM	muscle
33	chr11:46129200-46136200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr11:46129600-46136000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr11:46130800-46135600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:46130800-46135800	Weak transcription	Brain Substantia Nigra	brain
37	chr11:46130800-46138200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:46131400-46136000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:46131400-46140800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:46132200-46138400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:46133200-46138200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:46133600-46139800	Enhancers	Hela-S3	cervix
43	chr11:46133800-46135600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr11:46133800-46135600	Weak transcription	Fetal Lung	lung
45	chr11:46133800-46135800	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr11:46134000-46140400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr11:46134200-46135000	Enhancers	Liver	Liver
48	chr11:46134200-46135000	Enhancers	A549	lung
49	chr11:46134200-46135200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr11:46134200-46135200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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