Variant report

Variant	rs11038767
Chromosome Location	chr11:46126811-46126812
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46124972..46127798-chr11:46141820..46144494,2	MCF-7	breast:
2	chr11:46126556..46131545-chr11:46139597..46143863,6	K562	blood:
3	chr11:46125754..46127349-chr11:46143825..46145810,2	MCF-7	breast:
4	chr11:45867411..45869543-chr11:46126573..46129162,2	K562	blood:
5	chr11:46117325..46120030-chr11:46124694..46127016,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121671	Chromatin interaction
ENSG00000135365	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10769186	0.99[ASN][1000 genomes]
rs10838547	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10838551	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838552	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838555	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838558	0.82[ASN][1000 genomes]
rs10838559	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838560	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838562	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838564	0.99[ASN][1000 genomes]
rs10838565	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10838566	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10838567	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11038749	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11038761	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038772	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12283184	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12575808	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13377242	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1565412	0.82[ASN][1000 genomes]
rs2013010	0.82[ASN][1000 genomes]
rs2130475	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130476	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220546	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2932514	0.81[ASN][1000 genomes]
rs2959086	0.82[ASN][1000 genomes]
rs3929339	0.82[ASN][1000 genomes]
rs4755347	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4756054	0.82[ASN][1000 genomes]
rs6485655	0.80[AMR][1000 genomes]
rs6485663	0.81[ASN][1000 genomes]
rs7124070	0.86[AFR][1000 genomes]
rs7932691	0.99[ASN][1000 genomes]
rs7937896	0.82[ASN][1000 genomes]
rs7942083	0.99[ASN][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46079000-46128200	Weak transcription	Aorta	Aorta
2	chr11:46094400-46128200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:46106400-46131800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:46111600-46130400	Weak transcription	Fetal Stomach	stomach
5	chr11:46112600-46130400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:46118800-46128200	Weak transcription	Spleen	Spleen
7	chr11:46119000-46128200	Weak transcription	Gastric	stomach
8	chr11:46119000-46131200	Weak transcription	Esophagus	oesophagus
9	chr11:46121200-46127800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:46121200-46128200	Weak transcription	Right Ventricle	heart
11	chr11:46121400-46128200	Weak transcription	HSMM	muscle
12	chr11:46121800-46139200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:46122000-46127000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:46122000-46127000	Weak transcription	NH-A	brain
15	chr11:46122000-46139600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:46122400-46129800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:46122600-46127000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:46122600-46127600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:46122600-46127800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr11:46122600-46128000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:46122600-46131200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:46122600-46135400	Weak transcription	Primary B cells from cord blood	blood
23	chr11:46122600-46140400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:46122600-46140400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr11:46122800-46127600	Weak transcription	Brain Anterior Caudate	brain
26	chr11:46122800-46127800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:46122800-46127800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr11:46122800-46128200	Weak transcription	NHDF-Ad	bronchial
29	chr11:46122800-46130400	Weak transcription	A549	lung
30	chr11:46122800-46134200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr11:46122800-46134200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr11:46122800-46134400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr11:46123400-46127800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr11:46123400-46137400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:46123800-46138200	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr11:46124200-46129400	Enhancers	Fetal Heart	heart
37	chr11:46125600-46127000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr11:46125600-46128400	Enhancers	Fetal Lung	lung
39	chr11:46125600-46128600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:46125800-46127200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:46125800-46127200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr11:46125800-46127200	Enhancers	Ovary	ovary
43	chr11:46125800-46128800	Enhancers	Brain Hippocampus Middle	brain
44	chr11:46125800-46129000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr11:46125800-46129400	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr11:46126000-46127600	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr11:46126000-46129000	Enhancers	Brain Substantia Nigra	brain
48	chr11:46126200-46127200	Enhancers	Adipose Nuclei	Adipose
49	chr11:46126200-46127200	Enhancers	Psoas Muscle	Psoas
50	chr11:46126200-46129000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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