Variant report

Variant	rs10838558
Chromosome Location	chr11:46100072-46100073
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46098203..46100763-chr11:46102277..46105089,3	MCF-7	breast:
2	chr11:46098590..46101389-chr11:46102907..46105372,2	K562	blood:
3	chr11:46098590..46102412-chr11:46102521..46106687,4	K562	blood:
4	chr11:46092875..46097320-chr11:46098971..46101372,4	K562	blood:
5	chr11:46088023..46090704-chr11:46099772..46102518,2	MCF-7	breast:
6	chr1:115053337..115053915-chr11:46099819..46100673,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197323	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1038733	1.00[CEU][hapmap]
rs10742773	1.00[CEU][hapmap]
rs10769186	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838547	0.98[ASN][1000 genomes]
rs10838551	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10838552	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10838555	0.99[ASN][1000 genomes]
rs10838559	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10838560	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10838562	0.82[ASN][1000 genomes]
rs10838564	1.00[CEU][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838565	0.81[ASN][1000 genomes]
rs10838566	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs10838567	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs11038749	0.94[ASN][1000 genomes]
rs11038761	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs11038767	0.82[ASN][1000 genomes]
rs11038768	0.82[ASN][1000 genomes]
rs11820849	1.00[CEU][hapmap]
rs11827687	1.00[CEU][hapmap]
rs12283184	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs12575808	0.81[ASN][1000 genomes]
rs13377242	0.82[ASN][1000 genomes]
rs1401421	1.00[CEU][hapmap]
rs1490087	1.00[CEU][hapmap]
rs1565412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938429	1.00[CEU][hapmap]
rs16938437	1.00[CEU][hapmap]
rs1907003	1.00[CEU][hapmap]
rs1994599	1.00[CEU][hapmap]
rs2013010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130469	1.00[CEU][hapmap]
rs2130471	1.00[CEU][hapmap]
rs2130475	0.82[ASN][1000 genomes]
rs2130476	0.82[ASN][1000 genomes]
rs2171895	1.00[CEU][hapmap]
rs2220546	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2860433	1.00[CEU][hapmap]
rs2863714	1.00[CEU][hapmap]
rs2932510	1.00[CEU][hapmap]
rs2932512	1.00[CEU][hapmap]
rs2932513	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2932514	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2932515	1.00[CEU][hapmap]
rs2932516	1.00[CEU][hapmap]
rs2945998	1.00[CEU][hapmap]
rs2946002	1.00[CEU][hapmap]
rs2946005	1.00[CEU][hapmap]
rs2946009	1.00[CEU][hapmap]
rs2959082	1.00[CEU][hapmap]
rs2959083	1.00[CEU][hapmap]
rs2959085	1.00[CEU][hapmap]
rs2959086	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959095	1.00[CEU][hapmap]
rs2959096	1.00[CEU][hapmap]
rs2959097	1.00[CEU][hapmap]
rs2959103	1.00[CEU][hapmap]
rs2959104	1.00[CEU][hapmap]
rs3736508	0.84[JPT][hapmap]
rs3929339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237661	1.00[CEU][hapmap]
rs4755347	0.98[ASN][1000 genomes]
rs4756042	1.00[CEU][hapmap]
rs4756048	1.00[CEU][hapmap]
rs4756054	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756056	1.00[CEU][hapmap]
rs4756057	1.00[CEU][hapmap]
rs4756058	1.00[CEU][hapmap]
rs4756059	1.00[CEU][hapmap]
rs6485655	0.85[JPT][hapmap]
rs6485660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6485663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6485664	1.00[CEU][hapmap]
rs7103299	1.00[CEU][hapmap]
rs7106689	1.00[CEU][hapmap]
rs7120227	1.00[CEU][hapmap]
rs7129942	1.00[CEU][hapmap]
rs7397035	1.00[CEU][hapmap]
rs7924996	1.00[CEU][hapmap]
rs7932691	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7934407	1.00[CEU][hapmap]
rs7934572	1.00[CEU][hapmap]
rs7934681	1.00[CEU][hapmap]
rs7937896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942083	1.00[CEU][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7942246	1.00[CEU][hapmap]
rs7946524	1.00[CEU][hapmap]
rs939106	1.00[CEU][hapmap]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46062000-46100800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:46063200-46119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:46063600-46104600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:46071400-46114800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:46071400-46118800	Weak transcription	Lung	lung
6	chr11:46072000-46100800	Weak transcription	Thymus	Thymus
7	chr11:46072000-46101000	Weak transcription	Brain Anterior Caudate	brain
8	chr11:46072000-46119400	Weak transcription	Brain Angular Gyrus	brain
9	chr11:46072600-46100800	Weak transcription	Placenta	Placenta
10	chr11:46073200-46101000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr11:46073200-46101800	Weak transcription	Fetal Stomach	stomach
12	chr11:46073800-46122200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:46074200-46101200	Weak transcription	Brain Substantia Nigra	brain
14	chr11:46077600-46109400	Weak transcription	HepG2	liver
15	chr11:46079000-46128200	Weak transcription	Aorta	Aorta
16	chr11:46079600-46102200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:46080400-46120800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr11:46080600-46103000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:46082000-46114000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr11:46083600-46107600	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr11:46084800-46104800	Weak transcription	Fetal Brain Male	brain
22	chr11:46084800-46118600	Weak transcription	Pancreas	Pancrea
23	chr11:46085000-46119600	Weak transcription	Brain Germinal Matrix	brain
24	chr11:46085400-46106000	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:46085800-46111000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr11:46086600-46112200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:46087200-46120800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr11:46087400-46103800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:46087400-46104000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:46087600-46120400	Weak transcription	HSMMtube	muscle
31	chr11:46087600-46121000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr11:46089600-46120400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:46089800-46109600	Weak transcription	Fetal Kidney	kidney
34	chr11:46089800-46111400	Weak transcription	Hela-S3	cervix
35	chr11:46091600-46101000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr11:46091600-46101600	Weak transcription	Spleen	Spleen
37	chr11:46092600-46112200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:46092800-46113200	Weak transcription	Small Intestine	intestine
39	chr11:46093000-46101000	Weak transcription	Esophagus	oesophagus
40	chr11:46093400-46120000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr11:46093800-46104400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr11:46094400-46102000	Weak transcription	Gastric	stomach
43	chr11:46094400-46102600	Weak transcription	HSMM	muscle
44	chr11:46094400-46109400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:46094400-46118200	Weak transcription	Ovary	ovary
46	chr11:46094400-46119600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr11:46094400-46120200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr11:46094400-46128200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr11:46094600-46120800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr11:46095000-46121800	Weak transcription	Fetal Intestine Small	intestine

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