Variant report

Variant	rs7942246
Chromosome Location	chr11:46126373-46126374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46124972..46127798-chr11:46141820..46144494,2	MCF-7	breast:
2	chr11:46125754..46127349-chr11:46143825..46145810,2	MCF-7	breast:
3	chr11:46117325..46120030-chr11:46124694..46127016,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10128629	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1038733	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734539	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734540	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742773	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[ASN][1000 genomes]
rs10838528	1.00[ASN][1000 genomes]
rs10838558	1.00[CEU][hapmap]
rs10838563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838564	1.00[CEU][hapmap]
rs11038827	1.00[ASN][1000 genomes]
rs11820849	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820877	1.00[ASN][1000 genomes]
rs11827687	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11827732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828167	1.00[ASN][1000 genomes]
rs12292649	1.00[ASN][1000 genomes]
rs1401420	1.00[ASN][1000 genomes]
rs1401421	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1490082	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490087	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1565412	1.00[CEU][hapmap]
rs16938429	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs16938437	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs1907003	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1994599	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2013010	1.00[CEU][hapmap]
rs2130469	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130471	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130473	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171895	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860433	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2863714	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs28668543	1.00[ASN][1000 genomes]
rs2932510	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2932512	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2932515	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2932516	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2945996	1.00[ASN][1000 genomes]
rs2945998	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2946000	1.00[ASN][1000 genomes]
rs2946002	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs2946005	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2946008	1.00[ASN][1000 genomes]
rs2946009	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2959082	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959083	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959085	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs2959089	1.00[ASN][1000 genomes]
rs2959095	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2959096	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2959097	1.00[CEU][hapmap]
rs2959103	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs2959104	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3929339	1.00[CEU][hapmap]
rs4237661	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4281461	0.99[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756042	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs4756048	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4756056	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756057	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756058	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756059	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55945697	1.00[ASN][1000 genomes]
rs56288505	1.00[ASN][1000 genomes]
rs61882507	1.00[ASN][1000 genomes]
rs61882508	1.00[ASN][1000 genomes]
rs61882509	1.00[ASN][1000 genomes]
rs61882510	1.00[ASN][1000 genomes]
rs61882511	1.00[ASN][1000 genomes]
rs61882513	1.00[ASN][1000 genomes]
rs61882514	1.00[ASN][1000 genomes]
rs61882534	1.00[ASN][1000 genomes]
rs61882535	1.00[ASN][1000 genomes]
rs61882536	1.00[ASN][1000 genomes]
rs61882538	1.00[ASN][1000 genomes]
rs61882539	1.00[ASN][1000 genomes]
rs61882540	1.00[ASN][1000 genomes]
rs61882541	1.00[ASN][1000 genomes]
rs61882542	1.00[ASN][1000 genomes]
rs61882543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882547	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882679	1.00[ASN][1000 genomes]
rs61884152	1.00[ASN][1000 genomes]
rs6416136	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6485660	1.00[CEU][hapmap]
rs6485663	1.00[CEU][hapmap]
rs6485664	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103299	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106689	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111900	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120227	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125387	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129942	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130282	1.00[ASN][1000 genomes]
rs73452216	1.00[ASN][1000 genomes]
rs7397035	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7478883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924996	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932895	1.00[ASN][1000 genomes]
rs7934407	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934572	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7934681	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7937896	1.00[CEU][hapmap]
rs7940620	0.97[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7942083	1.00[CEU][hapmap]
rs7943416	1.00[ASN][1000 genomes]
rs7946524	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs939106	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs959241	1.00[YRI][hapmap];0.96[AFR][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46079000-46128200	Weak transcription	Aorta	Aorta
2	chr11:46094400-46128200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:46106400-46131800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:46111600-46130400	Weak transcription	Fetal Stomach	stomach
5	chr11:46112600-46130400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:46113600-46126600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr11:46118800-46128200	Weak transcription	Spleen	Spleen
8	chr11:46119000-46126600	Weak transcription	Lung	lung
9	chr11:46119000-46126600	Weak transcription	Pancreas	Pancrea
10	chr11:46119000-46128200	Weak transcription	Gastric	stomach
11	chr11:46119000-46131200	Weak transcription	Esophagus	oesophagus
12	chr11:46121200-46126800	Weak transcription	Fetal Brain Female	brain
13	chr11:46121200-46127800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:46121200-46128200	Weak transcription	Right Ventricle	heart
15	chr11:46121400-46128200	Weak transcription	HSMM	muscle
16	chr11:46121800-46126600	Weak transcription	NHEK	skin
17	chr11:46121800-46126800	Weak transcription	HUVEC	blood vessel
18	chr11:46121800-46139200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:46122000-46126400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:46122000-46126600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:46122000-46126600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr11:46122000-46126600	Weak transcription	Brain Germinal Matrix	brain
23	chr11:46122000-46126600	Weak transcription	Right Atrium	heart
24	chr11:46122000-46127000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:46122000-46127000	Weak transcription	NH-A	brain
26	chr11:46122000-46139600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:46122400-46126600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:46122400-46126600	Weak transcription	Fetal Thymus	thymus
29	chr11:46122400-46126600	Weak transcription	NHLF	lung
30	chr11:46122400-46126800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:46122400-46129800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:46122600-46126400	Weak transcription	Osteobl	bone
33	chr11:46122600-46126800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:46122600-46126800	Weak transcription	Small Intestine	intestine
35	chr11:46122600-46127000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:46122600-46127600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr11:46122600-46127800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr11:46122600-46128000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr11:46122600-46131200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:46122600-46135400	Weak transcription	Primary B cells from cord blood	blood
41	chr11:46122600-46140400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:46122600-46140400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr11:46122800-46126400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr11:46122800-46126400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:46122800-46126400	Weak transcription	Liver	Liver
46	chr11:46122800-46126400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr11:46122800-46126600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:46122800-46126600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:46122800-46126600	Weak transcription	Fetal Brain Male	brain
50	chr11:46122800-46126800	Weak transcription	Thymus	Thymus

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