Variant report

Variant	rs2959083
Chromosome Location	chr11:46076775-46076776
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45937043..45939390-chr11:46074975..46077923,2	K562	blood:
2	chr11:46069599..46074824-chr11:46075109..46078382,5	K562	blood:
3	chr11:46061076..46063761-chr11:46075337..46077557,2	K562	blood:
4	chr11:46075889..46078758-chr11:46078955..46080492,2	MCF-7	breast:
5	chr11:46072230..46074389-chr11:46075339..46077454,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121680	Chromatin interaction

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10128629	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1038733	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734539	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734540	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742773	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10838528	1.00[ASN][1000 genomes]
rs10838558	1.00[CEU][hapmap]
rs10838563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838564	1.00[CEU][hapmap]
rs11038827	1.00[ASN][1000 genomes]
rs11820849	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820877	1.00[ASN][1000 genomes]
rs11827687	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11827732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828167	1.00[ASN][1000 genomes]
rs12292649	1.00[ASN][1000 genomes]
rs1401420	1.00[ASN][1000 genomes]
rs1401421	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1490082	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490087	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1565412	1.00[CEU][hapmap]
rs16938429	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs16938437	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1907003	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1994599	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2013010	1.00[CEU][hapmap]
rs2130469	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130471	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130473	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171895	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860433	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2863714	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs28668543	1.00[ASN][1000 genomes]
rs2932510	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2932512	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2932515	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2932516	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2945996	1.00[ASN][1000 genomes]
rs2945998	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2946000	1.00[ASN][1000 genomes]
rs2946002	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2946005	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2946008	1.00[ASN][1000 genomes]
rs2946009	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2959082	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959085	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs2959089	1.00[ASN][1000 genomes]
rs2959095	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2959096	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2959097	1.00[CEU][hapmap]
rs2959103	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2959104	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3929339	1.00[CEU][hapmap]
rs4237661	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4281461	0.99[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756042	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4756048	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4756056	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756057	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756058	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756059	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55945697	1.00[ASN][1000 genomes]
rs56288505	1.00[ASN][1000 genomes]
rs61882507	1.00[ASN][1000 genomes]
rs61882508	1.00[ASN][1000 genomes]
rs61882509	1.00[ASN][1000 genomes]
rs61882510	1.00[ASN][1000 genomes]
rs61882511	1.00[ASN][1000 genomes]
rs61882513	1.00[ASN][1000 genomes]
rs61882514	1.00[ASN][1000 genomes]
rs61882534	1.00[ASN][1000 genomes]
rs61882535	1.00[ASN][1000 genomes]
rs61882536	1.00[ASN][1000 genomes]
rs61882538	1.00[ASN][1000 genomes]
rs61882539	1.00[ASN][1000 genomes]
rs61882540	1.00[ASN][1000 genomes]
rs61882541	1.00[ASN][1000 genomes]
rs61882542	1.00[ASN][1000 genomes]
rs61882543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882547	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884152	1.00[ASN][1000 genomes]
rs6416136	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6485660	1.00[CEU][hapmap]
rs6485663	1.00[CEU][hapmap]
rs6485664	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103299	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106689	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111900	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120227	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125387	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129942	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130282	1.00[ASN][1000 genomes]
rs73452216	1.00[ASN][1000 genomes]
rs7397035	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7478883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924996	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932895	1.00[ASN][1000 genomes]
rs7934407	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934572	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7934681	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7937896	1.00[CEU][hapmap]
rs7940620	0.97[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7942083	1.00[CEU][hapmap]
rs7942246	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943416	1.00[ASN][1000 genomes]
rs7946524	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs939106	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs959241	1.00[YRI][hapmap];0.96[AFR][1000 genomes]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46039200-46077200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:46039400-46096800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:46041400-46086600	Weak transcription	Fetal Intestine Large	intestine
4	chr11:46043200-46086800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:46045000-46087000	Weak transcription	Hela-S3	cervix
6	chr11:46049200-46078800	Weak transcription	Aorta	Aorta
7	chr11:46062000-46100800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:46063000-46086400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:46063200-46087200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr11:46063200-46119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr11:46063400-46086600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr11:46063600-46098000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:46063600-46104600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:46064000-46097600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr11:46066200-46086800	Weak transcription	Dnd41	blood
16	chr11:46067400-46086400	Weak transcription	Liver	Liver
17	chr11:46068600-46080600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr11:46068800-46096800	Weak transcription	Fetal Thymus	thymus
19	chr11:46070800-46096800	Weak transcription	A549	lung
20	chr11:46071200-46097800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:46071400-46094600	Weak transcription	Fetal Intestine Small	intestine
22	chr11:46071400-46097800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr11:46071400-46114800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:46071400-46118800	Weak transcription	Lung	lung
25	chr11:46071800-46093800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr11:46072000-46077000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr11:46072000-46079200	Weak transcription	Primary B cells from peripheral blood	blood
28	chr11:46072000-46080200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:46072000-46084000	Weak transcription	Small Intestine	intestine
30	chr11:46072000-46089200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:46072000-46092800	Weak transcription	Esophagus	oesophagus
32	chr11:46072000-46093800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr11:46072000-46093800	Weak transcription	Ovary	ovary
34	chr11:46072000-46093800	Weak transcription	Right Ventricle	heart
35	chr11:46072000-46093800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr11:46072000-46097600	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:46072000-46100800	Weak transcription	Thymus	Thymus
38	chr11:46072000-46101000	Weak transcription	Brain Anterior Caudate	brain
39	chr11:46072000-46119400	Weak transcription	Brain Angular Gyrus	brain
40	chr11:46072200-46089000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:46072200-46095200	Weak transcription	GM12878-XiMat	blood
42	chr11:46072400-46077000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr11:46072600-46076800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:46072600-46076800	Weak transcription	NHDF-Ad	bronchial
45	chr11:46072600-46077000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:46072600-46086400	Weak transcription	Fetal Brain Female	brain
47	chr11:46072600-46086600	Weak transcription	Adipose Nuclei	Adipose
48	chr11:46072600-46096800	Weak transcription	NH-A	brain
49	chr11:46072600-46097600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:46072600-46100800	Weak transcription	Placenta	Placenta

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