Variant report

Variant	rs1565412
Chromosome Location	chr11:46086147-46086148
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46072128..46074035-chr11:46085023..46087892,2	K562	blood:
2	chr11:46076814..46079379-chr11:46085470..46087126,2	K562	blood:
3	chr11:46085210..46087344-chr11:46140868..46143850,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1038733	1.00[CEU][hapmap]
rs10742773	1.00[CEU][hapmap]
rs10769186	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838547	0.98[ASN][1000 genomes]
rs10838551	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10838552	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10838555	0.99[ASN][1000 genomes]
rs10838558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838559	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10838560	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10838562	0.82[ASN][1000 genomes]
rs10838564	1.00[CEU][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838565	0.81[ASN][1000 genomes]
rs10838566	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs10838567	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs11038749	0.94[ASN][1000 genomes]
rs11038761	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs11038767	0.82[ASN][1000 genomes]
rs11038768	0.82[ASN][1000 genomes]
rs11820849	1.00[CEU][hapmap]
rs11827687	1.00[CEU][hapmap]
rs12283184	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs12575808	0.81[ASN][1000 genomes]
rs13377242	0.82[ASN][1000 genomes]
rs1401421	1.00[CEU][hapmap]
rs1490087	1.00[CEU][hapmap]
rs16938429	1.00[CEU][hapmap]
rs16938437	1.00[CEU][hapmap]
rs1907003	1.00[CEU][hapmap]
rs1994599	1.00[CEU][hapmap]
rs2013010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130469	1.00[CEU][hapmap]
rs2130471	1.00[CEU][hapmap]
rs2130475	0.82[ASN][1000 genomes]
rs2130476	0.82[ASN][1000 genomes]
rs2171895	1.00[CEU][hapmap]
rs2220546	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2860433	1.00[CEU][hapmap]
rs2863714	1.00[CEU][hapmap]
rs2932510	1.00[CEU][hapmap]
rs2932512	1.00[CEU][hapmap]
rs2932513	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2932514	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2932515	1.00[CEU][hapmap]
rs2932516	1.00[CEU][hapmap]
rs2945998	1.00[CEU][hapmap]
rs2946002	1.00[CEU][hapmap]
rs2946005	1.00[CEU][hapmap]
rs2946009	1.00[CEU][hapmap]
rs2959082	1.00[CEU][hapmap]
rs2959083	1.00[CEU][hapmap]
rs2959085	1.00[CEU][hapmap]
rs2959086	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959095	1.00[CEU][hapmap]
rs2959096	1.00[CEU][hapmap]
rs2959097	1.00[CEU][hapmap]
rs2959103	1.00[CEU][hapmap]
rs2959104	1.00[CEU][hapmap]
rs3736508	0.84[JPT][hapmap]
rs3929339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237661	1.00[CEU][hapmap]
rs4755347	0.98[ASN][1000 genomes]
rs4756042	1.00[CEU][hapmap]
rs4756048	1.00[CEU][hapmap]
rs4756054	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756056	1.00[CEU][hapmap]
rs4756057	1.00[CEU][hapmap]
rs4756058	1.00[CEU][hapmap]
rs4756059	1.00[CEU][hapmap]
rs6485655	0.85[JPT][hapmap]
rs6485660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6485663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6485664	1.00[CEU][hapmap]
rs7103299	1.00[CEU][hapmap]
rs7106689	1.00[CEU][hapmap]
rs7120227	1.00[CEU][hapmap]
rs7129942	1.00[CEU][hapmap]
rs7397035	1.00[CEU][hapmap]
rs7924996	1.00[CEU][hapmap]
rs7932691	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7934407	1.00[CEU][hapmap]
rs7934572	1.00[CEU][hapmap]
rs7934681	1.00[CEU][hapmap]
rs7937896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942083	1.00[CEU][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7942246	1.00[CEU][hapmap]
rs7946524	1.00[CEU][hapmap]
rs939106	1.00[CEU][hapmap]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46039400-46096800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:46041400-46086600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:46043200-46086800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:46045000-46087000	Weak transcription	Hela-S3	cervix
5	chr11:46062000-46100800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:46063000-46086400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:46063200-46087200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr11:46063200-46119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr11:46063400-46086600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:46063600-46098000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:46063600-46104600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:46064000-46097600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr11:46066200-46086800	Weak transcription	Dnd41	blood
14	chr11:46067400-46086400	Weak transcription	Liver	Liver
15	chr11:46068800-46096800	Weak transcription	Fetal Thymus	thymus
16	chr11:46070800-46096800	Weak transcription	A549	lung
17	chr11:46071200-46097800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:46071400-46094600	Weak transcription	Fetal Intestine Small	intestine
19	chr11:46071400-46097800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr11:46071400-46114800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:46071400-46118800	Weak transcription	Lung	lung
22	chr11:46071800-46093800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr11:46072000-46089200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:46072000-46092800	Weak transcription	Esophagus	oesophagus
25	chr11:46072000-46093800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:46072000-46093800	Weak transcription	Ovary	ovary
27	chr11:46072000-46093800	Weak transcription	Right Ventricle	heart
28	chr11:46072000-46093800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:46072000-46097600	Weak transcription	Brain Hippocampus Middle	brain
30	chr11:46072000-46100800	Weak transcription	Thymus	Thymus
31	chr11:46072000-46101000	Weak transcription	Brain Anterior Caudate	brain
32	chr11:46072000-46119400	Weak transcription	Brain Angular Gyrus	brain
33	chr11:46072200-46089000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:46072200-46095200	Weak transcription	GM12878-XiMat	blood
35	chr11:46072600-46086400	Weak transcription	Fetal Brain Female	brain
36	chr11:46072600-46086600	Weak transcription	Adipose Nuclei	Adipose
37	chr11:46072600-46096800	Weak transcription	NH-A	brain
38	chr11:46072600-46097600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr11:46072600-46100800	Weak transcription	Placenta	Placenta
40	chr11:46072800-46096800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr11:46073200-46086600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:46073200-46101000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:46073200-46101800	Weak transcription	Fetal Stomach	stomach
44	chr11:46073400-46086800	Weak transcription	Fetal Muscle Leg	muscle
45	chr11:46073400-46087200	Weak transcription	HSMMtube	muscle
46	chr11:46073400-46089400	Weak transcription	Fetal Kidney	kidney
47	chr11:46073400-46093800	Weak transcription	Left Ventricle	heart
48	chr11:46073600-46089200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr11:46073800-46122200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:46074000-46089200	Weak transcription	Psoas Muscle	Psoas

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