Variant report

Variant	rs11038761
Chromosome Location	chr11:46093755-46093756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46089194..46091532-chr11:46091610..46093980,2	K562	blood:
2	chr11:46092875..46097320-chr11:46098971..46101372,4	K562	blood:
3	chr11:46091800..46095251-chr11:46259322..46261381,3	K562	blood:
4	chr11:46092605..46094562-chr11:46143473..46145813,3	K562	blood:

Variant related genes	Relation type
ENSG00000254639	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10769178	0.89[AMR][1000 genomes]
rs10769186	0.99[ASN][1000 genomes]
rs10838542	0.91[AMR][1000 genomes]
rs10838547	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10838551	0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838552	0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838555	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838558	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs10838559	0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838560	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838562	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838564	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.99[ASN][1000 genomes]
rs10838565	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10838566	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10838567	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10838569	0.86[YRI][hapmap]
rs11038749	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11038767	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038768	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038772	0.95[ASN][1000 genomes]
rs12283184	0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12575808	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13377242	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1565412	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2013010	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2130475	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130476	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220546	0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2280331	0.81[LWK][hapmap]
rs2932514	0.81[ASN][1000 genomes]
rs2959086	0.82[ASN][1000 genomes]
rs3736508	0.85[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.82[AMR][1000 genomes]
rs3929339	0.89[JPT][hapmap];0.90[MEX][hapmap];0.82[ASN][1000 genomes]
rs4755347	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4756054	0.82[ASN][1000 genomes]
rs6485655	1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs6485660	0.89[JPT][hapmap]
rs6485663	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs7932691	0.99[ASN][1000 genomes]
rs7937896	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs7942083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs939105	0.80[MEX][hapmap]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46039400-46096800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:46062000-46100800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:46063200-46119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:46063600-46098000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr11:46063600-46104600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:46064000-46097600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr11:46068800-46096800	Weak transcription	Fetal Thymus	thymus
8	chr11:46070800-46096800	Weak transcription	A549	lung
9	chr11:46071200-46097800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:46071400-46094600	Weak transcription	Fetal Intestine Small	intestine
11	chr11:46071400-46097800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:46071400-46114800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:46071400-46118800	Weak transcription	Lung	lung
14	chr11:46071800-46093800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr11:46072000-46093800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:46072000-46093800	Weak transcription	Ovary	ovary
17	chr11:46072000-46093800	Weak transcription	Right Ventricle	heart
18	chr11:46072000-46093800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:46072000-46097600	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:46072000-46100800	Weak transcription	Thymus	Thymus
21	chr11:46072000-46101000	Weak transcription	Brain Anterior Caudate	brain
22	chr11:46072000-46119400	Weak transcription	Brain Angular Gyrus	brain
23	chr11:46072200-46095200	Weak transcription	GM12878-XiMat	blood
24	chr11:46072600-46096800	Weak transcription	NH-A	brain
25	chr11:46072600-46097600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:46072600-46100800	Weak transcription	Placenta	Placenta
27	chr11:46072800-46096800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:46073200-46101000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:46073200-46101800	Weak transcription	Fetal Stomach	stomach
30	chr11:46073400-46093800	Weak transcription	Left Ventricle	heart
31	chr11:46073800-46122200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:46074200-46101200	Weak transcription	Brain Substantia Nigra	brain
33	chr11:46077400-46093800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr11:46077600-46109400	Weak transcription	HepG2	liver
35	chr11:46079000-46128200	Weak transcription	Aorta	Aorta
36	chr11:46079600-46102200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr11:46080400-46120800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr11:46080600-46103000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:46082000-46114000	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr11:46083600-46107600	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr11:46083800-46093800	Weak transcription	Fetal Lung	lung
42	chr11:46084800-46104800	Weak transcription	Fetal Brain Male	brain
43	chr11:46084800-46118600	Weak transcription	Pancreas	Pancrea
44	chr11:46085000-46119600	Weak transcription	Brain Germinal Matrix	brain
45	chr11:46085400-46106000	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr11:46085800-46111000	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr11:46086200-46095000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:46086200-46096800	Weak transcription	NHLF	lung
49	chr11:46086600-46112200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:46086800-46099400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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