The 2.0 version of rSNPBase

Variant report

Variant rs12575808
Chromosome Location chr11:46130227-46130228
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:46106400-46131800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
2 chr11:46111600-46130400 Weak transcription Fetal Stomach stomach
3 chr11:46112600-46130400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr11:46119000-46131200 Weak transcription Esophagus oesophagus
5 chr11:46121800-46139200 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr11:46122000-46139600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr11:46122600-46131200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr11:46122600-46135400 Weak transcription Primary B cells from cord blood blood
9 chr11:46122600-46140400 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr11:46122600-46140400 Weak transcription Stomach Smooth Muscle stomach
11 chr11:46122800-46130400 Weak transcription A549 lung
12 chr11:46122800-46134200 Weak transcription Primary T helper naive cells from peripheral blood blood
13 chr11:46122800-46134200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr11:46122800-46134400 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr11:46123400-46137400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
16 chr11:46123800-46138200 Weak transcription Primary T cells fromperipheralblood blood
17 chr11:46126200-46134200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
18 chr11:46127000-46133400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
19 chr11:46127000-46134400 Weak transcription Primary T killer naive cells fromperipheralblood blood
20 chr11:46127000-46135800 Weak transcription Left Ventricle heart
21 chr11:46127000-46139400 Weak transcription NHEK skin
22 chr11:46127000-46140000 Weak transcription Osteobl bone
23 chr11:46127000-46140800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr11:46127000-46140800 Weak transcription Pancreas Pancrea
25 chr11:46127200-46131200 Weak transcription Psoas Muscle Psoas
26 chr11:46127200-46132800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr11:46127200-46133000 Weak transcription Fetal Adrenal Gland Adrenal Gland
28 chr11:46127200-46133600 Weak transcription GM12878-XiMat blood
29 chr11:46127200-46134200 Weak transcription Primary T helper cells PMA-I stimulated --
30 chr11:46127200-46134200 Weak transcription Liver Liver
31 chr11:46127200-46134400 Weak transcription Primary T cells from cord blood blood
32 chr11:46127200-46135800 Weak transcription Primary T killer memory cells from peripheral blood blood
33 chr11:46127200-46136000 Weak transcription Dnd41 blood
34 chr11:46127200-46138200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
35 chr11:46127200-46139600 Weak transcription Right Atrium heart
36 chr11:46127200-46140600 Weak transcription Small Intestine intestine
37 chr11:46128000-46134400 Weak transcription Primary T helper cells fromperipheralblood blood
38 chr11:46128200-46130400 Weak transcription Rectal Smooth Muscle rectum
39 chr11:46128200-46131200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
40 chr11:46128400-46130400 Weak transcription Fetal Lung lung
41 chr11:46128400-46131200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
42 chr11:46128400-46134400 Weak transcription Muscle Satellite Cultured Cells --
43 chr11:46128400-46134400 Weak transcription Skeletal Muscle Male skeletal muscle
44 chr11:46128400-46134600 Weak transcription Brain Germinal Matrix brain
45 chr11:46128400-46138800 Weak transcription NHDF-Ad bronchial
46 chr11:46128400-46139400 Weak transcription Thymus Thymus
47 chr11:46128600-46132400 Weak transcription Lung lung
48 chr11:46128600-46134000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
49 chr11:46128600-46134200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr11:46128600-46134200 Weak transcription Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015