Variant report

Variant	rs4756054
Chromosome Location	chr11:46116205-46116206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:46116166-46116252	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46115918..46118551-chr11:46119084..46120963,2	K562	blood:

Variant related genes	Relation type
PHF21A	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10769186	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838547	0.98[ASN][1000 genomes]
rs10838551	0.99[ASN][1000 genomes]
rs10838552	0.99[ASN][1000 genomes]
rs10838555	0.99[ASN][1000 genomes]
rs10838558	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838559	0.99[ASN][1000 genomes]
rs10838560	0.82[ASN][1000 genomes]
rs10838562	0.82[ASN][1000 genomes]
rs10838564	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838565	0.81[ASN][1000 genomes]
rs10838566	0.81[ASN][1000 genomes]
rs10838567	0.81[ASN][1000 genomes]
rs11038749	0.94[ASN][1000 genomes]
rs11038761	0.82[ASN][1000 genomes]
rs11038767	0.82[ASN][1000 genomes]
rs11038768	0.82[ASN][1000 genomes]
rs12283184	0.99[ASN][1000 genomes]
rs12575808	0.81[ASN][1000 genomes]
rs13377242	0.82[ASN][1000 genomes]
rs1565412	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2013010	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130475	0.82[ASN][1000 genomes]
rs2130476	0.82[ASN][1000 genomes]
rs2220546	0.99[ASN][1000 genomes]
rs2932513	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2932514	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2959086	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3929339	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755347	0.98[ASN][1000 genomes]
rs6485660	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6485663	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7932691	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7937896	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942083	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46063200-46119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr11:46071400-46118800	Weak transcription	Lung	lung
3	chr11:46072000-46119400	Weak transcription	Brain Angular Gyrus	brain
4	chr11:46073800-46122200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:46079000-46128200	Weak transcription	Aorta	Aorta
6	chr11:46080400-46120800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:46084800-46118600	Weak transcription	Pancreas	Pancrea
8	chr11:46085000-46119600	Weak transcription	Brain Germinal Matrix	brain
9	chr11:46087200-46120800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:46087600-46120400	Weak transcription	HSMMtube	muscle
11	chr11:46087600-46121000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr11:46089600-46120400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:46093400-46120000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:46094400-46118200	Weak transcription	Ovary	ovary
15	chr11:46094400-46119600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:46094400-46120200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:46094400-46128200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:46094600-46120800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:46095000-46121800	Weak transcription	Fetal Intestine Small	intestine
20	chr11:46096800-46120800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:46097200-46120800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr11:46097200-46121200	Weak transcription	HUVEC	blood vessel
23	chr11:46097400-46120800	Weak transcription	HMEC	breast
24	chr11:46097800-46120400	Weak transcription	NHLF	lung
25	chr11:46097800-46120400	Weak transcription	Osteobl	bone
26	chr11:46097800-46121000	Weak transcription	NHEK	skin
27	chr11:46098200-46118400	Weak transcription	Psoas Muscle	Psoas
28	chr11:46098400-46121200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr11:46098600-46120200	Weak transcription	GM12878-XiMat	blood
30	chr11:46098600-46120800	Weak transcription	Fetal Brain Female	brain
31	chr11:46099400-46117600	Weak transcription	K562	blood
32	chr11:46099400-46118400	Weak transcription	Fetal Heart	heart
33	chr11:46099600-46118600	Weak transcription	Left Ventricle	heart
34	chr11:46101200-46118200	Weak transcription	Esophagus	oesophagus
35	chr11:46101400-46119400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:46101400-46119600	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:46101400-46120200	Weak transcription	Brain Substantia Nigra	brain
38	chr11:46101600-46120800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr11:46102600-46121600	Weak transcription	Thymus	Thymus
40	chr11:46103600-46121400	Weak transcription	A549	lung
41	chr11:46104200-46120800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:46104600-46120800	Weak transcription	Duodenum Mucosa	Duodenum
43	chr11:46105000-46120800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr11:46105000-46121000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:46105000-46121200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr11:46105000-46121600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:46105200-46120600	Weak transcription	Dnd41	blood
48	chr11:46105400-46120800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr11:46105600-46120800	Weak transcription	HSMM	muscle
50	chr11:46105800-46120400	Weak transcription	NHDF-Ad	bronchial

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