Variant report

Variant	rs13377242
Chromosome Location	chr11:46128840-46128841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:46128096..46131028-chr11:46343420..46346390,2	K562	blood:
2	chr11:46119451..46121147-chr11:46127489..46129395,2	K562	blood:
3	chr11:46126888..46128874-chr11:46258941..46261512,2	K562	blood:
4	chr11:46126556..46131545-chr11:46139597..46143863,6	K562	blood:
5	chr11:45864922..45867381-chr11:46128289..46130207,2	K562	blood:
6	chr11:46127283..46129458-chr11:46315355..46317255,2	K562	blood:
7	chr11:46127361..46129172-chr11:46159102..46160610,2	K562	blood:
8	chr11:45867411..45869543-chr11:46126573..46129162,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction
ENSG00000121671	Chromatin interaction
ENSG00000157613	Chromatin interaction
ENSG00000254639	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10769186	0.99[ASN][1000 genomes]
rs10838547	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10838551	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838552	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838555	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838558	0.82[ASN][1000 genomes]
rs10838559	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838560	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838564	0.99[ASN][1000 genomes]
rs10838565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10838566	0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10838567	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11038749	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11038761	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038767	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038768	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038772	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12283184	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12575808	0.99[ASN][1000 genomes]
rs1565412	0.82[ASN][1000 genomes]
rs2013010	0.82[ASN][1000 genomes]
rs2130475	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220546	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2932514	0.81[ASN][1000 genomes]
rs2959086	0.82[ASN][1000 genomes]
rs3929339	0.82[ASN][1000 genomes]
rs4755347	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4756054	0.82[ASN][1000 genomes]
rs6485663	0.81[ASN][1000 genomes]
rs7124070	0.86[AFR][1000 genomes]
rs7932691	0.99[ASN][1000 genomes]
rs7937896	0.82[ASN][1000 genomes]
rs7942083	0.99[ASN][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46106400-46131800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:46111600-46130400	Weak transcription	Fetal Stomach	stomach
3	chr11:46112600-46130400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:46119000-46131200	Weak transcription	Esophagus	oesophagus
5	chr11:46121800-46139200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:46122000-46139600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:46122400-46129800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:46122600-46131200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:46122600-46135400	Weak transcription	Primary B cells from cord blood	blood
10	chr11:46122600-46140400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:46122600-46140400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:46122800-46130400	Weak transcription	A549	lung
13	chr11:46122800-46134200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:46122800-46134200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:46122800-46134400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr11:46123400-46137400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr11:46123800-46138200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr11:46124200-46129400	Enhancers	Fetal Heart	heart
19	chr11:46125800-46129000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:46125800-46129400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr11:46126000-46129000	Enhancers	Brain Substantia Nigra	brain
22	chr11:46126200-46129000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:46126200-46129600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:46126200-46129800	Flanking Active TSS	K562	blood
25	chr11:46126200-46134200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr11:46126400-46129000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:46126600-46129000	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr11:46126600-46129000	Enhancers	Fetal Brain Male	brain
29	chr11:46126800-46129600	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr11:46127000-46129200	Enhancers	Brain Cingulate Gyrus	brain
31	chr11:46127000-46133400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr11:46127000-46134400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr11:46127000-46135800	Weak transcription	Left Ventricle	heart
34	chr11:46127000-46139400	Weak transcription	NHEK	skin
35	chr11:46127000-46140000	Weak transcription	Osteobl	bone
36	chr11:46127000-46140800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:46127000-46140800	Weak transcription	Pancreas	Pancrea
38	chr11:46127200-46129800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:46127200-46131200	Weak transcription	Psoas Muscle	Psoas
40	chr11:46127200-46132800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:46127200-46133000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr11:46127200-46133600	Weak transcription	GM12878-XiMat	blood
43	chr11:46127200-46134200	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr11:46127200-46134200	Weak transcription	Liver	Liver
45	chr11:46127200-46134400	Weak transcription	Primary T cells from cord blood	blood
46	chr11:46127200-46135800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr11:46127200-46136000	Weak transcription	Dnd41	blood
48	chr11:46127200-46138200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:46127200-46139600	Weak transcription	Right Atrium	heart
50	chr11:46127200-46140600	Weak transcription	Small Intestine	intestine

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