Variant report

Variant	rs2220546
Chromosome Location	chr11:46094545-46094546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46092875..46097320-chr11:46098971..46101372,4	K562	blood:
2	chr11:46091800..46095251-chr11:46259322..46261381,3	K562	blood:
3	chr11:46092605..46094562-chr11:46143473..46145813,3	K562	blood:

Variant related genes	Relation type
ENSG00000254639	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10769178	0.81[AMR][1000 genomes]
rs10769186	0.82[ASN][1000 genomes]
rs10838542	0.89[AMR][1000 genomes]
rs10838547	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10838551	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838552	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838555	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10838559	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838560	0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838562	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838564	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs10838565	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10838566	0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10838567	0.89[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11038749	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11038761	0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11038767	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11038768	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11038772	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12283184	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575808	0.81[ASN][1000 genomes]
rs13377242	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1565412	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2013010	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2130475	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2130476	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2932513	0.95[ASN][1000 genomes]
rs2932514	0.99[ASN][1000 genomes]
rs2959086	0.99[ASN][1000 genomes]
rs3736508	0.83[JPT][hapmap]
rs3929339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4755347	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756054	0.99[ASN][1000 genomes]
rs6485655	0.85[JPT][hapmap];0.86[AMR][1000 genomes]
rs6485660	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6485663	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7932691	0.82[ASN][1000 genomes]
rs7937896	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7942083	0.90[JPT][hapmap];0.82[ASN][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46039400-46096800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:46062000-46100800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:46063200-46119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:46063600-46098000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr11:46063600-46104600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:46064000-46097600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr11:46068800-46096800	Weak transcription	Fetal Thymus	thymus
8	chr11:46070800-46096800	Weak transcription	A549	lung
9	chr11:46071200-46097800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:46071400-46094600	Weak transcription	Fetal Intestine Small	intestine
11	chr11:46071400-46097800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:46071400-46114800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:46071400-46118800	Weak transcription	Lung	lung
14	chr11:46072000-46097600	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:46072000-46100800	Weak transcription	Thymus	Thymus
16	chr11:46072000-46101000	Weak transcription	Brain Anterior Caudate	brain
17	chr11:46072000-46119400	Weak transcription	Brain Angular Gyrus	brain
18	chr11:46072200-46095200	Weak transcription	GM12878-XiMat	blood
19	chr11:46072600-46096800	Weak transcription	NH-A	brain
20	chr11:46072600-46097600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:46072600-46100800	Weak transcription	Placenta	Placenta
22	chr11:46072800-46096800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:46073200-46101000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:46073200-46101800	Weak transcription	Fetal Stomach	stomach
25	chr11:46073800-46122200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:46074200-46101200	Weak transcription	Brain Substantia Nigra	brain
27	chr11:46077600-46109400	Weak transcription	HepG2	liver
28	chr11:46079000-46128200	Weak transcription	Aorta	Aorta
29	chr11:46079600-46102200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr11:46080400-46120800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:46080600-46103000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:46082000-46114000	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr11:46083600-46107600	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr11:46084800-46104800	Weak transcription	Fetal Brain Male	brain
35	chr11:46084800-46118600	Weak transcription	Pancreas	Pancrea
36	chr11:46085000-46119600	Weak transcription	Brain Germinal Matrix	brain
37	chr11:46085400-46106000	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr11:46085800-46111000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr11:46086200-46095000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:46086200-46096800	Weak transcription	NHLF	lung
41	chr11:46086600-46112200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:46086800-46099400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:46087000-46099400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:46087200-46120800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr11:46087400-46097000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:46087400-46097600	Weak transcription	Fetal Brain Female	brain
47	chr11:46087400-46103800	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr11:46087400-46104000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:46087600-46097000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:46087600-46120400	Weak transcription	HSMMtube	muscle

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