Variant report

Variant	rs10769178
Chromosome Location	chr11:46000592-46000593
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45986502..45989270-chr11:45998897..46001765,2	K562	blood:
2	chr11:45919268..45921220-chr11:46000248..46001826,2	MCF-7	breast:
3	chr11:45985178..45989270-chr11:45998832..46003040,4	K562	blood:
4	chr11:45997750..46001916-chr11:46003160..46008009,7	K562	blood:
5	chr11:45998746..46001549-chr11:46002921..46008009,7	K562	blood:

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10838542	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10838547	0.84[AMR][1000 genomes]
rs10838551	0.81[AMR][1000 genomes]
rs10838552	0.84[AMR][1000 genomes]
rs10838555	0.81[AMR][1000 genomes]
rs10838560	0.83[AMR][1000 genomes]
rs11038749	0.81[AMR][1000 genomes]
rs11038761	0.89[AMR][1000 genomes]
rs2220546	0.81[AMR][1000 genomes]
rs3736508	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4755347	0.81[AMR][1000 genomes]
rs6485655	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523952	chr11:45983385-46028281	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45957200-46004400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:45957200-46004400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:45967600-46004600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:45982200-46002200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:45983000-46002200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr11:45985000-46002200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr11:45985400-46002600	Strong transcription	Primary B cells from cord blood	blood
8	chr11:45985800-46003800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:45987000-46004000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:45987200-46000800	Weak transcription	NHEK	skin
11	chr11:45987600-46004600	Weak transcription	Gastric	stomach
12	chr11:45988400-46004400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:45990400-46000600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:45990400-46001600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:45991000-46004400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:45991000-46004400	Weak transcription	A549	lung
17	chr11:45991800-46003600	Weak transcription	Brain Germinal Matrix	brain
18	chr11:45992200-46004400	Weak transcription	HMEC	breast
19	chr11:45992600-46003600	Weak transcription	Fetal Brain Male	brain
20	chr11:45992800-46001200	Weak transcription	Right Ventricle	heart
21	chr11:45992800-46003600	Weak transcription	Brain Angular Gyrus	brain
22	chr11:45992800-46004200	Weak transcription	HSMM	muscle
23	chr11:45992800-46004600	Weak transcription	Fetal Kidney	kidney
24	chr11:45993000-46000600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr11:45993000-46000600	Weak transcription	Aorta	Aorta
26	chr11:45993000-46000600	Weak transcription	Pancreas	Pancrea
27	chr11:45993000-46000800	Weak transcription	Lung	lung
28	chr11:45993000-46001200	Weak transcription	Left Ventricle	heart
29	chr11:45993000-46001200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:45993000-46003600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr11:45993000-46004200	Weak transcription	NHLF	lung
32	chr11:45993000-46004400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:45993000-46004400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:45993000-46004400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:45993000-46004400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr11:45993000-46004600	Weak transcription	Esophagus	oesophagus
37	chr11:45993000-46004600	Weak transcription	Spleen	Spleen
38	chr11:45993000-46015000	Weak transcription	Psoas Muscle	Psoas
39	chr11:45993000-46017600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:45993200-46000800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr11:45993200-46004200	Weak transcription	HUVEC	blood vessel
42	chr11:45993600-46004600	Weak transcription	Small Intestine	intestine
43	chr11:45995000-46001600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:45995000-46001600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:45995000-46002200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr11:45995200-46001400	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr11:45995200-46002000	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr11:45995400-46001600	Strong transcription	Placenta	Placenta
49	chr11:45995400-46002400	Weak transcription	K562	blood
50	chr11:45995400-46004000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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