Variant report

Variant	rs10838542
Chromosome Location	chr11:46044592-46044593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45937834..45940802-chr11:46042452..46044955,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121680	Chromatin interaction

rs_ID	r²[population]
rs10769178	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10838547	0.86[AMR][1000 genomes]
rs10838551	0.89[AMR][1000 genomes]
rs10838552	0.86[AMR][1000 genomes]
rs10838555	0.84[AMR][1000 genomes]
rs10838559	0.86[AMR][1000 genomes]
rs10838560	0.89[AMR][1000 genomes]
rs10838566	0.85[AMR][1000 genomes]
rs11038749	0.89[AMR][1000 genomes]
rs11038761	0.91[AMR][1000 genomes]
rs12283184	0.83[AMR][1000 genomes]
rs2220546	0.89[AMR][1000 genomes]
rs3736508	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4755347	0.89[AMR][1000 genomes]
rs6485655	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46001400-46070400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:46002000-46056200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr11:46012800-46062800	Weak transcription	GM12878-XiMat	blood
4	chr11:46016200-46048200	Weak transcription	Esophagus	oesophagus
5	chr11:46022000-46074600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:46023400-46047800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:46023400-46048200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:46023600-46046400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:46025600-46047400	Weak transcription	HSMMtube	muscle
10	chr11:46025600-46056200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:46026200-46055600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:46026400-46047800	Weak transcription	HSMM	muscle
13	chr11:46031400-46048400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:46032400-46048400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:46032600-46052800	Weak transcription	Fetal Lung	lung
16	chr11:46033600-46044600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:46034200-46049000	Weak transcription	Fetal Kidney	kidney
18	chr11:46034400-46048200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:46034400-46056000	Weak transcription	Primary B cells from cord blood	blood
20	chr11:46034800-46061800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr11:46035200-46048000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:46035200-46048200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:46035200-46048200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr11:46035200-46048400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:46035200-46061800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:46035200-46062000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:46035400-46048400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:46035400-46060800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:46035800-46048200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr11:46038600-46047200	Weak transcription	Right Ventricle	heart
31	chr11:46038800-46053400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:46039200-46046600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr11:46039200-46077200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:46039400-46096800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr11:46040200-46048000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr11:46040200-46048000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:46040200-46048600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:46041000-46061400	Weak transcription	Adipose Nuclei	Adipose
39	chr11:46041000-46066200	Weak transcription	Liver	Liver
40	chr11:46041000-46071000	Weak transcription	Placenta	Placenta
41	chr11:46041200-46048200	Weak transcription	Fetal Muscle Leg	muscle
42	chr11:46041200-46051200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr11:46041200-46070800	Weak transcription	Thymus	Thymus
44	chr11:46041400-46048200	Weak transcription	Left Ventricle	heart
45	chr11:46041400-46086600	Weak transcription	Fetal Intestine Large	intestine
46	chr11:46041600-46048200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:46041800-46044600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:46041800-46045200	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr11:46041800-46045200	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr11:46042000-46048000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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