Variant report

Variant	rs10838560
Chromosome Location	chr11:46108358-46108359
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46101740..46104280-chr11:46106863..46109654,3	K562	blood:
2	chr11:46107014..46108792-chr11:46142351..46144902,2	MCF-7	breast:
3	chr11:46107186..46109095-chr11:46118821..46122678,3	K562	blood:

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10769178	0.83[AMR][1000 genomes]
rs10769186	0.99[ASN][1000 genomes]
rs10838542	0.89[AMR][1000 genomes]
rs10838547	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10838551	0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838552	0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838555	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838558	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10838559	0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838562	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838564	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10838565	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10838566	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10838567	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10838569	0.86[YRI][hapmap]
rs11038749	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038761	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038767	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038768	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038772	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12283184	0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12575808	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13377242	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1565412	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2013010	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2130475	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130476	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220546	0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2932514	0.81[ASN][1000 genomes]
rs2959086	0.82[ASN][1000 genomes]
rs3736508	0.95[JPT][hapmap]
rs3929339	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4755347	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4756054	0.82[ASN][1000 genomes]
rs6485655	0.95[JPT][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6485660	0.90[JPT][hapmap]
rs6485663	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs7932691	0.99[ASN][1000 genomes]
rs7937896	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs7942083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46063200-46119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr11:46071400-46114800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:46071400-46118800	Weak transcription	Lung	lung
4	chr11:46072000-46119400	Weak transcription	Brain Angular Gyrus	brain
5	chr11:46073800-46122200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:46077600-46109400	Weak transcription	HepG2	liver
7	chr11:46079000-46128200	Weak transcription	Aorta	Aorta
8	chr11:46080400-46120800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:46082000-46114000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:46084800-46118600	Weak transcription	Pancreas	Pancrea
11	chr11:46085000-46119600	Weak transcription	Brain Germinal Matrix	brain
12	chr11:46085800-46111000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:46086600-46112200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:46087200-46120800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:46087600-46120400	Weak transcription	HSMMtube	muscle
16	chr11:46087600-46121000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr11:46089600-46120400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:46089800-46109600	Weak transcription	Fetal Kidney	kidney
19	chr11:46089800-46111400	Weak transcription	Hela-S3	cervix
20	chr11:46092600-46112200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:46092800-46113200	Weak transcription	Small Intestine	intestine
22	chr11:46093400-46120000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:46094400-46109400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:46094400-46118200	Weak transcription	Ovary	ovary
25	chr11:46094400-46119600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr11:46094400-46120200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr11:46094400-46128200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:46094600-46120800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:46095000-46121800	Weak transcription	Fetal Intestine Small	intestine
30	chr11:46096800-46120800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:46097200-46109800	Weak transcription	NH-A	brain
32	chr11:46097200-46111400	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:46097200-46120800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr11:46097200-46121200	Weak transcription	HUVEC	blood vessel
35	chr11:46097400-46109000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:46097400-46120800	Weak transcription	HMEC	breast
37	chr11:46097800-46120400	Weak transcription	NHLF	lung
38	chr11:46097800-46120400	Weak transcription	Osteobl	bone
39	chr11:46097800-46121000	Weak transcription	NHEK	skin
40	chr11:46098200-46118400	Weak transcription	Psoas Muscle	Psoas
41	chr11:46098400-46121200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr11:46098600-46111200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:46098600-46120200	Weak transcription	GM12878-XiMat	blood
44	chr11:46098600-46120800	Weak transcription	Fetal Brain Female	brain
45	chr11:46098800-46109200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:46098800-46110200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr11:46099200-46111200	Weak transcription	Fetal Intestine Large	intestine
48	chr11:46099400-46117600	Weak transcription	K562	blood
49	chr11:46099400-46118400	Weak transcription	Fetal Heart	heart
50	chr11:46099600-46118600	Weak transcription	Left Ventricle	heart

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