Variant report

Variant	rs10838551
Chromosome Location	chr11:46073113-46073114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46072653..46074381-chr11:46077518..46079344,2	K562	blood:
2	chr11:46072230..46074389-chr11:46075339..46077454,2	MCF-7	breast:
3	chr11:46069599..46074824-chr11:46075109..46078382,5	K562	blood:
4	chr11:46072128..46074035-chr11:46085023..46087892,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10769178	0.81[AMR][1000 genomes]
rs10769186	0.82[ASN][1000 genomes]
rs10838542	0.89[AMR][1000 genomes]
rs10838547	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10838552	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838555	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10838559	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838560	0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838562	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838564	0.90[JPT][hapmap];0.86[MEX][hapmap];0.82[ASN][1000 genomes]
rs10838565	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10838566	0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10838567	1.00[ASW][hapmap];0.90[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11038749	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11038761	0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11038767	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11038768	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11038772	0.84[AMR][1000 genomes]
rs12283184	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575808	0.81[ASN][1000 genomes]
rs13377242	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1565412	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2013010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2130475	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2130476	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2220546	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2932513	0.95[ASN][1000 genomes]
rs2932514	0.99[ASN][1000 genomes]
rs2959086	0.99[ASN][1000 genomes]
rs3736508	0.84[JPT][hapmap];0.90[MEX][hapmap]
rs3929339	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.99[ASN][1000 genomes]
rs4755347	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756054	0.99[ASN][1000 genomes]
rs6485655	0.84[JPT][hapmap];0.86[AMR][1000 genomes]
rs6485660	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6485663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7932691	0.82[ASN][1000 genomes]
rs7937896	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7942083	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs939105	0.80[MEX][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10838551	EGR2	trans	brain	seeQTL
rs10838551	ZNF331	trans	brain	seeQTL
rs10838551	PTGS2	trans	brain	seeQTL

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46022000-46074600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr11:46039200-46077200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:46039400-46096800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:46041400-46086600	Weak transcription	Fetal Intestine Large	intestine
5	chr11:46043200-46086800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:46045000-46087000	Weak transcription	Hela-S3	cervix
7	chr11:46049200-46078800	Weak transcription	Aorta	Aorta
8	chr11:46062000-46100800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:46063000-46086400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr11:46063200-46073600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:46063200-46087200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr11:46063200-46119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:46063400-46073200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:46063400-46086600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr11:46063600-46098000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:46063600-46104600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:46064000-46097600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr11:46066200-46086800	Weak transcription	Dnd41	blood
19	chr11:46067200-46074600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr11:46067400-46086400	Weak transcription	Liver	Liver
21	chr11:46068000-46073600	Weak transcription	K562	blood
22	chr11:46068600-46080600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr11:46068800-46096800	Weak transcription	Fetal Thymus	thymus
24	chr11:46069200-46073400	Enhancers	HSMMtube	muscle
25	chr11:46070200-46073200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr11:46070400-46073200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:46070400-46073200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:46070400-46073600	Enhancers	Fetal Heart	heart
29	chr11:46070400-46074000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:46070400-46074600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:46070600-46073200	Enhancers	Fetal Stomach	stomach
32	chr11:46070600-46073800	Enhancers	Colon Smooth Muscle	Colon
33	chr11:46070600-46074000	Enhancers	H1 Cell Line	embryonic stem cell
34	chr11:46070600-46074400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:46070600-46074400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:46070600-46074600	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr11:46070800-46073400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:46070800-46073400	Enhancers	Fetal Muscle Leg	muscle
39	chr11:46070800-46073800	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr11:46070800-46073800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:46070800-46074600	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr11:46070800-46074600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:46070800-46076400	Weak transcription	Spleen	Spleen
44	chr11:46070800-46096800	Weak transcription	A549	lung
45	chr11:46071000-46073200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:46071000-46073400	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr11:46071000-46073400	Enhancers	Placenta Amnion	Placenta Amnion
48	chr11:46071000-46073400	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr11:46071000-46073400	Enhancers	HSMM	muscle
50	chr11:46071000-46074000	Enhancers	Cortex derived primary cultured neurospheres	brain

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