Variant report

Variant	rs6485660
Chromosome Location	chr11:46071727-46071728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46063771..46065667-chr11:46071208..46072854,2	K562	blood:
2	chr11:46069599..46074824-chr11:46075109..46078382,5	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1038733	1.00[CEU][hapmap]
rs10742773	1.00[CEU][hapmap]
rs10769186	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10838547	0.93[ASN][1000 genomes]
rs10838551	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10838552	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10838555	0.95[ASN][1000 genomes]
rs10838558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10838559	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10838560	0.90[JPT][hapmap]
rs10838564	1.00[CEU][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10838566	0.90[JPT][hapmap]
rs10838567	0.90[JPT][hapmap]
rs11038749	0.90[ASN][1000 genomes]
rs11038761	0.89[JPT][hapmap]
rs11820849	1.00[CEU][hapmap]
rs11827687	1.00[CEU][hapmap]
rs12283184	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs1401421	1.00[CEU][hapmap]
rs1490087	1.00[CEU][hapmap]
rs1565412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16938429	1.00[CEU][hapmap]
rs16938437	1.00[CEU][hapmap]
rs1907003	1.00[CEU][hapmap]
rs1994599	1.00[CEU][hapmap]
rs2013010	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2130469	1.00[CEU][hapmap]
rs2130471	1.00[CEU][hapmap]
rs2171895	1.00[CEU][hapmap]
rs2220546	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2860433	1.00[CEU][hapmap]
rs2863714	1.00[CEU][hapmap]
rs2932510	1.00[CEU][hapmap]
rs2932512	1.00[CEU][hapmap]
rs2932513	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2932514	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2932515	1.00[CEU][hapmap]
rs2932516	1.00[CEU][hapmap]
rs2945998	1.00[CEU][hapmap]
rs2946002	1.00[CEU][hapmap]
rs2946005	1.00[CEU][hapmap]
rs2946009	1.00[CEU][hapmap]
rs2959082	1.00[CEU][hapmap]
rs2959083	1.00[CEU][hapmap]
rs2959085	1.00[CEU][hapmap]
rs2959086	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2959095	1.00[CEU][hapmap]
rs2959096	1.00[CEU][hapmap]
rs2959097	1.00[CEU][hapmap]
rs2959103	1.00[CEU][hapmap]
rs2959104	1.00[CEU][hapmap]
rs3736508	0.84[JPT][hapmap]
rs3929339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4237661	1.00[CEU][hapmap]
rs4755347	0.93[ASN][1000 genomes]
rs4756042	1.00[CEU][hapmap]
rs4756048	1.00[CEU][hapmap]
rs4756054	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756056	1.00[CEU][hapmap]
rs4756057	1.00[CEU][hapmap]
rs4756058	1.00[CEU][hapmap]
rs4756059	1.00[CEU][hapmap]
rs6485655	0.85[JPT][hapmap]
rs6485663	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6485664	1.00[CEU][hapmap]
rs7103299	1.00[CEU][hapmap]
rs7106689	1.00[CEU][hapmap]
rs7120227	1.00[CEU][hapmap]
rs7129942	1.00[CEU][hapmap]
rs7397035	1.00[CEU][hapmap]
rs7924996	1.00[CEU][hapmap]
rs7932691	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7934407	1.00[CEU][hapmap]
rs7934572	1.00[CEU][hapmap]
rs7934681	1.00[CEU][hapmap]
rs7937896	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7942083	1.00[CEU][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7942246	1.00[CEU][hapmap]
rs7946524	1.00[CEU][hapmap]
rs939106	1.00[CEU][hapmap]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46022000-46074600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr11:46039200-46077200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:46039400-46096800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:46041400-46086600	Weak transcription	Fetal Intestine Large	intestine
5	chr11:46043200-46086800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:46045000-46087000	Weak transcription	Hela-S3	cervix
7	chr11:46049200-46078800	Weak transcription	Aorta	Aorta
8	chr11:46062000-46100800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:46062200-46071800	Weak transcription	Small Intestine	intestine
10	chr11:46063000-46086400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr11:46063200-46073600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:46063200-46087200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr11:46063200-46119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr11:46063400-46073200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr11:46063400-46086600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:46063600-46098000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:46063600-46104600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:46064000-46097600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr11:46064800-46072200	Strong transcription	Primary B cells from cord blood	blood
20	chr11:46066200-46086800	Weak transcription	Dnd41	blood
21	chr11:46067200-46074600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr11:46067400-46086400	Weak transcription	Liver	Liver
23	chr11:46068000-46073600	Weak transcription	K562	blood
24	chr11:46068400-46071800	Weak transcription	Brain Germinal Matrix	brain
25	chr11:46068600-46080600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr11:46068800-46096800	Weak transcription	Fetal Thymus	thymus
27	chr11:46069200-46073400	Enhancers	HSMMtube	muscle
28	chr11:46069800-46071800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr11:46070200-46073200	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr11:46070400-46072000	Strong transcription	Primary B cells from peripheral blood	blood
31	chr11:46070400-46072000	Enhancers	Primary hematopoietic stem cells	blood
32	chr11:46070400-46072600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:46070400-46073200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:46070400-46073200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:46070400-46073600	Enhancers	Fetal Heart	heart
36	chr11:46070400-46074000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:46070400-46074600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:46070600-46071800	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr11:46070600-46072000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
40	chr11:46070600-46072000	Strong transcription	Primary T cells from cord blood	blood
41	chr11:46070600-46072000	Enhancers	Right Ventricle	heart
42	chr11:46070600-46072200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:46070600-46072200	Strong transcription	GM12878-XiMat	blood
44	chr11:46070600-46073200	Enhancers	Fetal Stomach	stomach
45	chr11:46070600-46073800	Enhancers	Colon Smooth Muscle	Colon
46	chr11:46070600-46074000	Enhancers	H1 Cell Line	embryonic stem cell
47	chr11:46070600-46074400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:46070600-46074400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:46070600-46074600	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr11:46070800-46072000	Enhancers	Duodenum Smooth Muscle	Duodenum

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