Variant report

Variant	rs3736508
Chromosome Location	chr11:45975130-45975131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10769178	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10838542	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10838551	0.84[JPT][hapmap];0.90[MEX][hapmap]
rs10838552	0.84[JPT][hapmap]
rs10838558	0.84[JPT][hapmap]
rs10838559	0.84[JPT][hapmap];0.90[MEX][hapmap]
rs10838560	0.95[JPT][hapmap]
rs10838564	0.95[JPT][hapmap]
rs10838566	0.95[JPT][hapmap];0.85[MEX][hapmap]
rs10838567	0.95[JPT][hapmap];0.85[MEX][hapmap]
rs11038761	0.85[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.82[AMR][1000 genomes]
rs12283184	0.89[JPT][hapmap]
rs12575808	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1565412	0.84[JPT][hapmap]
rs2013010	0.84[JPT][hapmap]
rs2220546	0.83[JPT][hapmap]
rs3929339	0.84[JPT][hapmap];0.81[MEX][hapmap]
rs6485655	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6485660	0.84[JPT][hapmap]
rs6485663	0.84[JPT][hapmap]
rs7937896	0.84[JPT][hapmap]
rs7942083	0.95[JPT][hapmap]
rs939105	0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516442	chr11:45899962-45983385	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45952400-45996200	Weak transcription	Stomach Mucosa	stomach
2	chr11:45953000-45988600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:45953200-45975400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:45954000-45978800	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:45957200-46004400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:45957200-46004400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:45957600-45986400	Weak transcription	HMEC	breast
8	chr11:45957800-45986400	Weak transcription	NHEK	skin
9	chr11:45958600-45979000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:45958800-45979000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr11:45960400-45986600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:45961400-45975400	Strong transcription	Placenta	Placenta
13	chr11:45962000-45978800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:45962200-45977200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:45962200-45978400	Strong transcription	Primary T cells from cord blood	blood
16	chr11:45962400-45975600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr11:45962600-45975200	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr11:45962600-45979200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:45963000-45975200	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr11:45963000-45975200	Strong transcription	Fetal Muscle Trunk	muscle
21	chr11:45963000-45977400	Strong transcription	Primary B cells from cord blood	blood
22	chr11:45963200-45977600	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:45963400-45975400	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr11:45963600-45975800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:45965200-45975200	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr11:45965400-45975200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:45965600-45975200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr11:45965800-45977200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:45966400-45979000	Strong transcription	Primary B cells from peripheral blood	blood
30	chr11:45966800-45975200	Strong transcription	Dnd41	blood
31	chr11:45967000-45975200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:45967600-46004600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:45967800-45977600	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:45968000-45985800	Weak transcription	K562	blood
35	chr11:45969000-45975200	Strong transcription	Stomach Smooth Muscle	stomach
36	chr11:45969000-45976600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr11:45969600-45975600	Strong transcription	Hela-S3	cervix
38	chr11:45969800-45983400	Weak transcription	Fetal Heart	heart
39	chr11:45970400-45985200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:45970600-45983400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:45970600-45986200	Weak transcription	NHLF	lung
42	chr11:45970600-45986600	Weak transcription	Pancreas	Pancrea
43	chr11:45970600-45986800	Weak transcription	HepG2	liver
44	chr11:45970800-45975600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:45970800-45983000	Weak transcription	Fetal Brain Female	brain
46	chr11:45970800-45989200	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr11:45970800-45990400	Weak transcription	NHDF-Ad	bronchial
48	chr11:45971000-45977600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:45971000-45983400	Weak transcription	Right Ventricle	heart
50	chr11:45971000-45985800	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links