Variant report

Variant	rs2932515
Chromosome Location	chr11:46105688-46105689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46104640..46106555-chr11:46110652..46112549,2	MCF-7	breast:
2	chr11:46103778..46106516-chr11:46111669..46113878,2	K562	blood:
3	chr11:46098590..46102412-chr11:46102521..46106687,4	K562	blood:

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction

Extended variants
information (count: 112 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10128629	0.97[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1038733	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734539	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734540	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742773	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[ASN][1000 genomes]
rs10838528	1.00[ASN][1000 genomes]
rs10838558	1.00[CEU][hapmap]
rs10838563	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838564	1.00[CEU][hapmap]
rs11038827	1.00[ASN][1000 genomes]
rs11820849	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820877	1.00[ASN][1000 genomes]
rs11827687	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11827732	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828167	1.00[ASN][1000 genomes]
rs12292649	1.00[ASN][1000 genomes]
rs1401420	1.00[ASN][1000 genomes]
rs1401421	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1490082	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490087	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1565412	1.00[CEU][hapmap]
rs16938429	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs16938437	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs1907003	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1994599	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2013010	1.00[CEU][hapmap]
rs2130469	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130470	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130471	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130473	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171895	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860433	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2863714	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs28668543	1.00[ASN][1000 genomes]
rs2932510	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2932512	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2932516	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2945996	1.00[ASN][1000 genomes]
rs2945998	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2946000	1.00[ASN][1000 genomes]
rs2946002	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs2946005	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2946008	1.00[ASN][1000 genomes]
rs2946009	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2959082	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959083	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959085	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs2959089	1.00[ASN][1000 genomes]
rs2959095	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2959096	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2959097	1.00[CEU][hapmap]
rs2959103	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs2959104	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3929339	1.00[CEU][hapmap]
rs4237661	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4281461	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756042	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs4756048	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4756056	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756057	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756058	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756059	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55945697	1.00[ASN][1000 genomes]
rs56288505	1.00[ASN][1000 genomes]
rs61882507	1.00[ASN][1000 genomes]
rs61882508	1.00[ASN][1000 genomes]
rs61882509	1.00[ASN][1000 genomes]
rs61882510	1.00[ASN][1000 genomes]
rs61882511	1.00[ASN][1000 genomes]
rs61882513	1.00[ASN][1000 genomes]
rs61882514	1.00[ASN][1000 genomes]
rs61882534	1.00[ASN][1000 genomes]
rs61882535	1.00[ASN][1000 genomes]
rs61882536	1.00[ASN][1000 genomes]
rs61882538	1.00[ASN][1000 genomes]
rs61882539	1.00[ASN][1000 genomes]
rs61882540	1.00[ASN][1000 genomes]
rs61882541	1.00[ASN][1000 genomes]
rs61882542	1.00[ASN][1000 genomes]
rs61882543	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882544	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882545	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882546	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882547	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884152	1.00[ASN][1000 genomes]
rs6416136	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6485660	1.00[CEU][hapmap]
rs6485663	1.00[CEU][hapmap]
rs6485664	1.00[CEU][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103299	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106689	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111900	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120227	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125387	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129942	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130282	1.00[ASN][1000 genomes]
rs73452216	1.00[ASN][1000 genomes]
rs7397035	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7478883	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924996	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932895	1.00[ASN][1000 genomes]
rs7934407	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934572	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7934681	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7937896	1.00[CEU][hapmap]
rs7940620	0.96[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7942083	1.00[CEU][hapmap]
rs7942246	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943416	1.00[ASN][1000 genomes]
rs7946524	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs939106	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs959241	1.00[YRI][hapmap];0.95[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2932515	NR1H3	cis	multi-tissue	Pritchard

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46063200-46119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr11:46071400-46114800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:46071400-46118800	Weak transcription	Lung	lung
4	chr11:46072000-46119400	Weak transcription	Brain Angular Gyrus	brain
5	chr11:46073800-46122200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:46077600-46109400	Weak transcription	HepG2	liver
7	chr11:46079000-46128200	Weak transcription	Aorta	Aorta
8	chr11:46080400-46120800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:46082000-46114000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:46083600-46107600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr11:46084800-46118600	Weak transcription	Pancreas	Pancrea
12	chr11:46085000-46119600	Weak transcription	Brain Germinal Matrix	brain
13	chr11:46085400-46106000	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:46085800-46111000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:46086600-46112200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:46087200-46120800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:46087600-46120400	Weak transcription	HSMMtube	muscle
18	chr11:46087600-46121000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr11:46089600-46120400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr11:46089800-46109600	Weak transcription	Fetal Kidney	kidney
21	chr11:46089800-46111400	Weak transcription	Hela-S3	cervix
22	chr11:46092600-46112200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:46092800-46113200	Weak transcription	Small Intestine	intestine
24	chr11:46093400-46120000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:46094400-46109400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:46094400-46118200	Weak transcription	Ovary	ovary
27	chr11:46094400-46119600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr11:46094400-46120200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:46094400-46128200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:46094600-46120800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:46095000-46121800	Weak transcription	Fetal Intestine Small	intestine
32	chr11:46096800-46120800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:46097200-46109800	Weak transcription	NH-A	brain
34	chr11:46097200-46111400	Weak transcription	Colon Smooth Muscle	Colon
35	chr11:46097200-46120800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr11:46097200-46121200	Weak transcription	HUVEC	blood vessel
37	chr11:46097400-46109000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr11:46097400-46120800	Weak transcription	HMEC	breast
39	chr11:46097800-46120400	Weak transcription	NHLF	lung
40	chr11:46097800-46120400	Weak transcription	Osteobl	bone
41	chr11:46097800-46121000	Weak transcription	NHEK	skin
42	chr11:46098200-46118400	Weak transcription	Psoas Muscle	Psoas
43	chr11:46098400-46121200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr11:46098600-46105800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:46098600-46111200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:46098600-46120200	Weak transcription	GM12878-XiMat	blood
47	chr11:46098600-46120800	Weak transcription	Fetal Brain Female	brain
48	chr11:46098800-46108000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr11:46098800-46109200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:46098800-46110200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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