The 2.0 version of rSNPBase

Variant report

Variant rs55945697
Chromosome Location chr11:46006500-46006501
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:45993000-46015000 Weak transcription Psoas Muscle Psoas
2 chr11:45993000-46017600 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr11:46000400-46013000 Weak transcription Fetal Intestine Large intestine
4 chr11:46000600-46010400 Weak transcription Hela-S3 cervix
5 chr11:46000800-46010200 Weak transcription Liver Liver
6 chr11:46000800-46012400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr11:46001000-46015400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
8 chr11:46001400-46013200 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr11:46001400-46013600 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr11:46001400-46015200 Weak transcription Pancreas Pancrea
11 chr11:46001400-46016000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr11:46001400-46070400 Weak transcription Primary hematopoietic stem cells blood
13 chr11:46001600-46006800 Weak transcription Thymus Thymus
14 chr11:46001600-46007200 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr11:46001600-46015200 Weak transcription Fetal Muscle Trunk muscle
16 chr11:46001600-46015400 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr11:46001600-46016400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
18 chr11:46001600-46021000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
19 chr11:46002000-46015000 Weak transcription Fetal Muscle Leg muscle
20 chr11:46002000-46025000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr11:46002000-46042400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
22 chr11:46002000-46056200 Weak transcription Primary T helper cells fromperipheralblood blood
23 chr11:46002200-46024800 Weak transcription Primary neutrophils fromperipheralblood blood
24 chr11:46002200-46025000 Weak transcription Primary monocytes fromperipheralblood blood
25 chr11:46002600-46012000 Weak transcription GM12878-XiMat blood
26 chr11:46002600-46023200 Weak transcription Primary B cells from peripheral blood blood
27 chr11:46003600-46006800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
28 chr11:46004000-46007000 Enhancers iPS-15b Cell Line embryonic stem cell
29 chr11:46004000-46007600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr11:46004600-46007800 Enhancers Cortex derived primary cultured neurospheres brain
31 chr11:46004600-46012400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr11:46004800-46006800 Enhancers HUES48 Cell Line embryonic stem cell
33 chr11:46004800-46007800 Weak transcription Gastric stomach
34 chr11:46004800-46009200 Weak transcription Fetal Kidney kidney
35 chr11:46004800-46011200 Weak transcription HUVEC blood vessel
36 chr11:46004800-46015000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
37 chr11:46005000-46006800 Enhancers iPS-20b Cell Line embryonic stem cell
38 chr11:46005000-46007000 Weak transcription Primary T helper cells PMA-I stimulated --
39 chr11:46005000-46012000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr11:46005000-46012000 Weak transcription Ovary ovary
41 chr11:46005000-46014400 Weak transcription Fetal Stomach stomach
42 chr11:46005200-46007000 Enhancers ES-I3 Cell Line embryonic stem cell
43 chr11:46005200-46008800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
44 chr11:46005200-46012000 Weak transcription Duodenum Smooth Muscle Duodenum
45 chr11:46005200-46014800 Weak transcription Brain Cingulate Gyrus brain
46 chr11:46005200-46014800 Weak transcription NHLF lung
47 chr11:46005200-46015000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
48 chr11:46005400-46006800 Enhancers iPS-18 Cell Line embryonic stem cell
49 chr11:46005400-46007000 Weak transcription Primary T cells fromperipheralblood blood
50 chr11:46005400-46008800 Weak transcription Primary T helper 17 cells PMA-I stimulated --

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Last update: Aug 31, 2015