Variant report

Variant	rs1973721
Chromosome Location	chr11:45994419-45994420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10742773	0.97[EUR][1000 genomes]
rs10769177	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10838537	0.82[AFR][1000 genomes]
rs11820877	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11827687	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11828167	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1401420	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1401421	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16938429	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16938437	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2860376	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2860433	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2863714	0.95[EUR][1000 genomes]
rs2945996	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2945998	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2946000	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2946002	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2946005	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2946008	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2946009	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2959088	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2959089	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2959095	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2959096	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2959097	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2959103	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4756042	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4756043	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4756048	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55945697	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61652532	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61882508	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61882509	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61882510	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61882511	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61882513	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61882514	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61882534	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61882535	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61882536	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61882538	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61882539	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61882540	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61882541	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs61882542	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7130282	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73452216	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7932895	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7934572	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7934681	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs939106	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523952	chr11:45983385-46028281	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv38731	chr11:45993457-45998686	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45952400-45996200	Weak transcription	Stomach Mucosa	stomach
2	chr11:45957200-46004400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:45957200-46004400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:45967600-46004600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:45975200-45999200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr11:45980200-45995600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:45981400-45995000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:45982200-46002200	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:45983000-46002200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:45984000-45995000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:45985000-46002200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr11:45985400-46002600	Strong transcription	Primary B cells from cord blood	blood
13	chr11:45985800-45997800	Strong transcription	Primary T cells from cord blood	blood
14	chr11:45985800-46003800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:45987000-46004000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:45987200-46000800	Weak transcription	NHEK	skin
17	chr11:45987600-46004600	Weak transcription	Gastric	stomach
18	chr11:45988400-46004400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:45989400-45994800	Weak transcription	Fetal Heart	heart
20	chr11:45989400-46000000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:45989800-46000000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr11:45990000-46000000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:45990200-45995800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:45990400-46000600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:45990400-46001600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:45990800-46000000	Weak transcription	NH-A	brain
27	chr11:45991000-46004400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr11:45991000-46004400	Weak transcription	A549	lung
29	chr11:45991200-45995400	Strong transcription	K562	blood
30	chr11:45991400-45995600	Weak transcription	Colonic Mucosa	Colon
31	chr11:45991400-45997600	Weak transcription	Fetal Intestine Small	intestine
32	chr11:45991800-46003600	Weak transcription	Brain Germinal Matrix	brain
33	chr11:45992200-46004400	Weak transcription	HMEC	breast
34	chr11:45992400-45996200	Weak transcription	NHDF-Ad	bronchial
35	chr11:45992600-46000000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr11:45992600-46003600	Weak transcription	Fetal Brain Male	brain
37	chr11:45992800-45994800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:45992800-45996400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr11:45992800-45997200	Weak transcription	HSMMtube	muscle
40	chr11:45992800-45997400	Weak transcription	Hela-S3	cervix
41	chr11:45992800-45998400	Weak transcription	GM12878-XiMat	blood
42	chr11:45992800-45999400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr11:45992800-45999800	Weak transcription	HepG2	liver
44	chr11:45992800-46000000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr11:45992800-46000000	Weak transcription	Fetal Lung	lung
46	chr11:45992800-46001200	Weak transcription	Right Ventricle	heart
47	chr11:45992800-46003600	Weak transcription	Brain Angular Gyrus	brain
48	chr11:45992800-46004200	Weak transcription	HSMM	muscle
49	chr11:45992800-46004600	Weak transcription	Fetal Kidney	kidney
50	chr11:45993000-45994600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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