Variant report

Variant	rs2959096
Chromosome Location	chr11:45972868-45972869
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45971282..45973265-chr11:45973486..45975190,2	K562	blood:
2	chr11:45961559..45964396-chr11:45971528..45973143,2	K562	blood:

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10128629	1.00[ASN][1000 genomes]
rs1038733	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10734539	1.00[ASN][1000 genomes]
rs10734540	1.00[ASN][1000 genomes]
rs10742773	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769177	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10838528	1.00[ASN][1000 genomes]
rs10838537	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10838558	1.00[CEU][hapmap]
rs10838563	1.00[ASN][1000 genomes]
rs10838564	1.00[CEU][hapmap]
rs11820849	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11820877	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827732	1.00[ASN][1000 genomes]
rs11828167	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1401420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1401421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490082	1.00[ASN][1000 genomes]
rs1490087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1565412	1.00[CEU][hapmap]
rs16938429	1.00[CEU][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938437	1.00[CEU][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907003	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1973721	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1994599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2013010	1.00[CEU][hapmap]
rs2130469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2130470	1.00[ASN][1000 genomes]
rs2130471	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2130473	1.00[ASN][1000 genomes]
rs2171895	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2860376	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2860433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2863714	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2932510	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2932512	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2932515	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2932516	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2945996	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2945998	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2946000	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2946002	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2946005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2946008	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2946009	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959082	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2959083	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2959085	1.00[CEU][hapmap]
rs2959088	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2959089	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959095	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2959103	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959104	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs3929339	1.00[CEU][hapmap]
rs4237661	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4281461	1.00[ASN][1000 genomes]
rs4756042	1.00[CEU][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756043	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4756048	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4756057	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4756058	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4756059	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs55945697	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61652532	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61882507	1.00[ASN][1000 genomes]
rs61882508	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882509	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882510	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882511	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882513	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882514	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882534	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882535	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882536	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882538	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882539	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882540	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882541	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882542	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882543	1.00[ASN][1000 genomes]
rs61882544	1.00[ASN][1000 genomes]
rs61882545	1.00[ASN][1000 genomes]
rs61882546	1.00[ASN][1000 genomes]
rs61882547	1.00[ASN][1000 genomes]
rs6485660	1.00[CEU][hapmap]
rs6485663	1.00[CEU][hapmap]
rs6485664	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7103299	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7106689	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7111900	1.00[ASN][1000 genomes]
rs7120227	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7125387	1.00[ASN][1000 genomes]
rs7129942	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7130282	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73452216	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7397035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7478883	1.00[ASN][1000 genomes]
rs7924996	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7932895	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934407	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7934572	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934681	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937896	1.00[CEU][hapmap]
rs7942083	1.00[CEU][hapmap]
rs7942246	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7946524	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs939106	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516442	chr11:45899962-45983385	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45952400-45996200	Weak transcription	Stomach Mucosa	stomach
2	chr11:45953000-45988600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:45953200-45975400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:45954000-45978800	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:45957200-46004400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:45957200-46004400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:45957600-45986400	Weak transcription	HMEC	breast
8	chr11:45957800-45986400	Weak transcription	NHEK	skin
9	chr11:45958600-45979000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:45958800-45979000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr11:45960400-45986600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:45961400-45975400	Strong transcription	Placenta	Placenta
13	chr11:45962000-45978800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:45962200-45977200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:45962200-45978400	Strong transcription	Primary T cells from cord blood	blood
16	chr11:45962400-45975600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr11:45962600-45975200	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr11:45962600-45979200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:45963000-45975200	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr11:45963000-45975200	Strong transcription	Fetal Muscle Trunk	muscle
21	chr11:45963000-45977400	Strong transcription	Primary B cells from cord blood	blood
22	chr11:45963200-45974000	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:45963200-45974200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:45963200-45977600	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:45963400-45975400	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr11:45963600-45975800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr11:45964000-45975000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr11:45964400-45974000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:45965000-45973800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:45965200-45975000	Strong transcription	Duodenum Mucosa	Duodenum
31	chr11:45965200-45975200	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr11:45965400-45973200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr11:45965400-45975200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:45965600-45975200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr11:45965800-45977200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr11:45966000-45974400	Strong transcription	Fetal Thymus	thymus
37	chr11:45966000-45975000	Strong transcription	Primary hematopoietic stem cells	blood
38	chr11:45966400-45979000	Strong transcription	Primary B cells from peripheral blood	blood
39	chr11:45966800-45975200	Strong transcription	Dnd41	blood
40	chr11:45967000-45975200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr11:45967600-46004600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:45967800-45974800	Weak transcription	NH-A	brain
43	chr11:45967800-45977600	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:45968000-45985800	Weak transcription	K562	blood
45	chr11:45969000-45975200	Strong transcription	Stomach Smooth Muscle	stomach
46	chr11:45969000-45976600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr11:45969600-45975600	Strong transcription	Hela-S3	cervix
48	chr11:45969800-45983400	Weak transcription	Fetal Heart	heart
49	chr11:45970400-45985200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:45970600-45983400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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