Variant report

Variant	rs4756057
Chromosome Location	chr11:46133493-46133494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46131944..46133865-chr11:46302576..46304186,2	K562	blood:
2	chr11:46121068..46122754-chr11:46132234..46134547,2	MCF-7	breast:

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10128629	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1038733	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734539	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742773	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[ASN][1000 genomes]
rs10838528	1.00[ASN][1000 genomes]
rs10838558	1.00[CEU][hapmap]
rs10838563	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838564	1.00[CEU][hapmap]
rs11038827	1.00[ASN][1000 genomes]
rs11820849	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820877	1.00[ASN][1000 genomes]
rs11827687	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11827732	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828167	1.00[ASN][1000 genomes]
rs12292649	1.00[ASN][1000 genomes]
rs1401420	1.00[ASN][1000 genomes]
rs1401421	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1490082	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490087	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1565412	1.00[CEU][hapmap]
rs16938429	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs16938437	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs1907003	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1994599	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2013010	1.00[CEU][hapmap]
rs2130469	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130470	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130471	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130473	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171895	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860433	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2863714	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs28668543	1.00[ASN][1000 genomes]
rs2932510	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2932512	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2932515	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2932516	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2945996	1.00[ASN][1000 genomes]
rs2945998	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2946000	1.00[ASN][1000 genomes]
rs2946002	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs2946005	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2946008	1.00[ASN][1000 genomes]
rs2946009	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2959082	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959083	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959085	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs2959089	1.00[ASN][1000 genomes]
rs2959095	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2959096	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2959097	1.00[CEU][hapmap]
rs2959103	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs2959104	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3929339	1.00[CEU][hapmap]
rs4237661	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4281461	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756042	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs4756048	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4756056	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756058	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756059	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55945697	1.00[ASN][1000 genomes]
rs56288505	1.00[ASN][1000 genomes]
rs61882507	1.00[ASN][1000 genomes]
rs61882508	1.00[ASN][1000 genomes]
rs61882509	1.00[ASN][1000 genomes]
rs61882510	1.00[ASN][1000 genomes]
rs61882511	1.00[ASN][1000 genomes]
rs61882513	1.00[ASN][1000 genomes]
rs61882514	1.00[ASN][1000 genomes]
rs61882534	1.00[ASN][1000 genomes]
rs61882535	1.00[ASN][1000 genomes]
rs61882536	1.00[ASN][1000 genomes]
rs61882538	1.00[ASN][1000 genomes]
rs61882539	1.00[ASN][1000 genomes]
rs61882540	1.00[ASN][1000 genomes]
rs61882541	1.00[ASN][1000 genomes]
rs61882542	1.00[ASN][1000 genomes]
rs61882543	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882544	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882545	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882546	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882547	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882679	1.00[ASN][1000 genomes]
rs61884152	1.00[ASN][1000 genomes]
rs6416136	0.97[AFR][1000 genomes]
rs6485660	1.00[CEU][hapmap]
rs6485663	1.00[CEU][hapmap]
rs6485664	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103299	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106689	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111900	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120227	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129942	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130282	1.00[ASN][1000 genomes]
rs73452216	1.00[ASN][1000 genomes]
rs7397035	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7478883	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924996	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932895	1.00[ASN][1000 genomes]
rs7934407	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934572	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7934681	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7937896	1.00[CEU][hapmap]
rs7940620	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7942083	1.00[CEU][hapmap]
rs7942246	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943416	1.00[ASN][1000 genomes]
rs7946524	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs939106	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs959241	1.00[YRI][hapmap];0.96[AFR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46121800-46139200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:46122000-46139600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:46122600-46135400	Weak transcription	Primary B cells from cord blood	blood
4	chr11:46122600-46140400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:46122600-46140400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:46122800-46134200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:46122800-46134200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr11:46122800-46134400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:46123400-46137400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:46123800-46138200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr11:46126200-46134200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:46127000-46134400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:46127000-46135800	Weak transcription	Left Ventricle	heart
14	chr11:46127000-46139400	Weak transcription	NHEK	skin
15	chr11:46127000-46140000	Weak transcription	Osteobl	bone
16	chr11:46127000-46140800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:46127000-46140800	Weak transcription	Pancreas	Pancrea
18	chr11:46127200-46133600	Weak transcription	GM12878-XiMat	blood
19	chr11:46127200-46134200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr11:46127200-46134200	Weak transcription	Liver	Liver
21	chr11:46127200-46134400	Weak transcription	Primary T cells from cord blood	blood
22	chr11:46127200-46135800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:46127200-46136000	Weak transcription	Dnd41	blood
24	chr11:46127200-46138200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:46127200-46139600	Weak transcription	Right Atrium	heart
26	chr11:46127200-46140600	Weak transcription	Small Intestine	intestine
27	chr11:46128000-46134400	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr11:46128400-46134400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:46128400-46134400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:46128400-46134600	Weak transcription	Brain Germinal Matrix	brain
31	chr11:46128400-46138800	Weak transcription	NHDF-Ad	bronchial
32	chr11:46128400-46139400	Weak transcription	Thymus	Thymus
33	chr11:46128600-46134000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr11:46128600-46134200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:46128600-46134200	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr11:46128600-46134200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:46128600-46134600	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr11:46128600-46135600	Weak transcription	Ovary	ovary
39	chr11:46128600-46138200	Weak transcription	Spleen	Spleen
40	chr11:46128600-46139800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:46128600-46140400	Weak transcription	Right Ventricle	heart
42	chr11:46128800-46134400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:46128800-46134400	Weak transcription	Primary hematopoietic stem cells	blood
44	chr11:46128800-46135600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr11:46128800-46135600	Weak transcription	Fetal Brain Female	brain
46	chr11:46129000-46134200	Weak transcription	Adipose Nuclei	Adipose
47	chr11:46129000-46134400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:46129000-46134800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:46129000-46135400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:46129000-46135600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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