The 2.0 version of rSNPBase

Variant report

Variant rs1490082
Chromosome Location chr11:46139285-46139286
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:46122000-46139600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
2 chr11:46122600-46140400 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr11:46122600-46140400 Weak transcription Stomach Smooth Muscle stomach
4 chr11:46127000-46139400 Weak transcription NHEK skin
5 chr11:46127000-46140000 Weak transcription Osteobl bone
6 chr11:46127000-46140800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr11:46127000-46140800 Weak transcription Pancreas Pancrea
8 chr11:46127200-46139600 Weak transcription Right Atrium heart
9 chr11:46127200-46140600 Weak transcription Small Intestine intestine
10 chr11:46128400-46139400 Weak transcription Thymus Thymus
11 chr11:46128600-46139800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr11:46128600-46140400 Weak transcription Right Ventricle heart
13 chr11:46129000-46139600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr11:46129000-46140200 Weak transcription HSMM muscle
15 chr11:46131400-46140800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
16 chr11:46133600-46139800 Enhancers Hela-S3 cervix
17 chr11:46134000-46140400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
18 chr11:46134200-46140200 Enhancers Primary hematopoietic stem cells short term culture blood
19 chr11:46134200-46140400 Enhancers Primary T helper naive cells from peripheral blood blood
20 chr11:46134400-46139400 Weak transcription iPS-20b Cell Line embryonic stem cell
21 chr11:46134400-46139400 Enhancers Primary hematopoietic stem cells blood
22 chr11:46134400-46139400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr11:46134800-46140400 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr11:46135000-46140400 Weak transcription Fetal Intestine Small intestine
25 chr11:46135400-46140400 Enhancers Fetal Heart heart
26 chr11:46135600-46139600 Enhancers Brain Cingulate Gyrus brain
27 chr11:46135600-46140000 Enhancers Cortex derived primary cultured neurospheres brain
28 chr11:46135600-46140800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
29 chr11:46135800-46139400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr11:46135800-46140400 Enhancers Brain Substantia Nigra brain
31 chr11:46136000-46139600 Weak transcription H1 Cell Line embryonic stem cell
32 chr11:46136000-46140200 Enhancers Primary T helper cells fromperipheralblood blood
33 chr11:46136000-46140400 Weak transcription Psoas Muscle Psoas
34 chr11:46136200-46139800 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr11:46136400-46140000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr11:46136800-46139800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr11:46136800-46140200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr11:46137000-46140400 Enhancers Fetal Lung lung
39 chr11:46137200-46139400 Active TSS K562 blood
40 chr11:46137200-46140800 Enhancers Primary T helper naive cells fromperipheralblood blood
41 chr11:46137400-46140000 Enhancers Brain Anterior Caudate brain
42 chr11:46137400-46140200 Enhancers Brain Hippocampus Middle brain
43 chr11:46137600-46140400 Enhancers Primary T killer naive cells fromperipheralblood blood
44 chr11:46137800-46139600 Enhancers Primary T cells from cord blood blood
45 chr11:46137800-46139800 Enhancers Primary T regulatory cells fromperipheralblood blood
46 chr11:46138000-46139400 Enhancers Primary T helper cells PMA-I stimulated --
47 chr11:46138000-46140400 Weak transcription Brain Inferior Temporal Lobe brain
48 chr11:46138000-46140600 Enhancers Primary B cells from peripheral blood blood
49 chr11:46138200-46139600 Enhancers Primary monocytes fromperipheralblood blood
50 chr11:46138200-46139600 Enhancers Fetal Stomach stomach

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Last update: Aug 31, 2015