Variant report

Variant	rs61652532
Chromosome Location	chr11:46032971-46032972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46024538..46028805-chr11:46032055..46036011,4	K562	blood:
2	chr11:46014298..46016604-chr11:46031314..46033806,2	K562	blood:
3	chr11:46030678..46033076-chr11:46065487..46067655,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10742773	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10769177	0.86[AMR][1000 genomes]
rs10838537	0.82[AFR][1000 genomes]
rs11820877	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11827687	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11828167	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1401420	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1401421	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16938429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16938437	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1973721	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2860376	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2860433	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2863714	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2945996	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2945998	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2946000	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2946002	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2946005	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2946008	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2946009	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2959088	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2959095	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2959096	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2959097	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2959103	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4756042	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4756043	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4756048	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55945697	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61882508	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61882509	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61882510	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61882511	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61882513	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61882514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61882534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61882535	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61882536	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61882538	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61882539	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61882540	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61882541	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61882542	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7130282	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73452216	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7932895	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7934572	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7934681	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs939106	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522527	chr11:46024183-46033104	Enhancers Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46001400-46070400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:46002000-46042400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:46002000-46056200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:46012800-46062800	Weak transcription	GM12878-XiMat	blood
5	chr11:46016200-46048200	Weak transcription	Esophagus	oesophagus
6	chr11:46016800-46044000	Weak transcription	Primary T cells from cord blood	blood
7	chr11:46022000-46033600	Weak transcription	Primary B cells from cord blood	blood
8	chr11:46022000-46074600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr11:46023400-46038200	Weak transcription	A549	lung
10	chr11:46023400-46041800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:46023400-46047800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:46023400-46048200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:46023600-46041600	Weak transcription	Ovary	ovary
14	chr11:46023600-46046400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr11:46024800-46042600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr11:46025600-46033600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:46025600-46033600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr11:46025600-46041800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr11:46025600-46047400	Weak transcription	HSMMtube	muscle
20	chr11:46025600-46056200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:46026200-46033400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:46026200-46055600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:46026400-46033800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:46026400-46034000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:46026400-46047800	Weak transcription	HSMM	muscle
26	chr11:46026800-46033600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr11:46028000-46033400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:46028200-46033000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:46028600-46033400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr11:46030000-46041800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr11:46031200-46034200	Enhancers	K562	blood
32	chr11:46031400-46033000	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:46031400-46048400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:46032000-46033400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:46032200-46033400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr11:46032200-46037400	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr11:46032200-46042400	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr11:46032400-46034800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:46032400-46035200	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr11:46032400-46048400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:46032600-46033600	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:46032600-46042800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:46032600-46052800	Weak transcription	Fetal Lung	lung
44	chr11:46032800-46033000	Enhancers	Right Atrium	heart
45	chr11:46032800-46033200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links