Variant report

Variant	rs10769186
Chromosome Location	chr11:46126730-46126731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46124972..46127798-chr11:46141820..46144494,2	MCF-7	breast:
2	chr11:46126556..46131545-chr11:46139597..46143863,6	K562	blood:
3	chr11:46125754..46127349-chr11:46143825..46145810,2	MCF-7	breast:
4	chr11:45867411..45869543-chr11:46126573..46129162,2	K562	blood:
5	chr11:46117325..46120030-chr11:46124694..46127016,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction
ENSG00000121671	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10838547	0.81[ASN][1000 genomes]
rs10838551	0.82[ASN][1000 genomes]
rs10838552	0.82[ASN][1000 genomes]
rs10838555	0.82[ASN][1000 genomes]
rs10838558	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10838559	0.82[ASN][1000 genomes]
rs10838560	0.99[ASN][1000 genomes]
rs10838562	0.99[ASN][1000 genomes]
rs10838564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838565	0.98[ASN][1000 genomes]
rs10838566	0.98[ASN][1000 genomes]
rs10838567	0.98[ASN][1000 genomes]
rs11038761	0.99[ASN][1000 genomes]
rs11038767	0.99[ASN][1000 genomes]
rs11038768	0.99[ASN][1000 genomes]
rs11038772	0.94[ASN][1000 genomes]
rs12283184	0.82[ASN][1000 genomes]
rs12575808	0.98[ASN][1000 genomes]
rs13377242	0.99[ASN][1000 genomes]
rs1565412	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2013010	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2130475	0.99[ASN][1000 genomes]
rs2130476	0.99[ASN][1000 genomes]
rs2220546	0.82[ASN][1000 genomes]
rs2932513	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2932514	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2959086	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3929339	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4755347	0.81[ASN][1000 genomes]
rs4756054	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6485660	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6485663	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7932691	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937896	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7942083	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46079000-46128200	Weak transcription	Aorta	Aorta
2	chr11:46094400-46128200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:46106400-46131800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:46111600-46130400	Weak transcription	Fetal Stomach	stomach
5	chr11:46112600-46130400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:46118800-46128200	Weak transcription	Spleen	Spleen
7	chr11:46119000-46128200	Weak transcription	Gastric	stomach
8	chr11:46119000-46131200	Weak transcription	Esophagus	oesophagus
9	chr11:46121200-46126800	Weak transcription	Fetal Brain Female	brain
10	chr11:46121200-46127800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:46121200-46128200	Weak transcription	Right Ventricle	heart
12	chr11:46121400-46128200	Weak transcription	HSMM	muscle
13	chr11:46121800-46126800	Weak transcription	HUVEC	blood vessel
14	chr11:46121800-46139200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:46122000-46127000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:46122000-46127000	Weak transcription	NH-A	brain
17	chr11:46122000-46139600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:46122400-46126800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:46122400-46129800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:46122600-46126800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:46122600-46126800	Weak transcription	Small Intestine	intestine
22	chr11:46122600-46127000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:46122600-46127600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:46122600-46127800	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr11:46122600-46128000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:46122600-46131200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:46122600-46135400	Weak transcription	Primary B cells from cord blood	blood
28	chr11:46122600-46140400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:46122600-46140400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr11:46122800-46126800	Weak transcription	Thymus	Thymus
31	chr11:46122800-46127600	Weak transcription	Brain Anterior Caudate	brain
32	chr11:46122800-46127800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:46122800-46127800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr11:46122800-46128200	Weak transcription	NHDF-Ad	bronchial
35	chr11:46122800-46130400	Weak transcription	A549	lung
36	chr11:46122800-46134200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr11:46122800-46134200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr11:46122800-46134400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr11:46123400-46127800	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr11:46123400-46137400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:46123800-46126800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:46123800-46138200	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr11:46124200-46126800	Weak transcription	Dnd41	blood
44	chr11:46124200-46129400	Enhancers	Fetal Heart	heart
45	chr11:46124600-46126800	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:46124600-46126800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr11:46125600-46127000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr11:46125600-46128400	Enhancers	Fetal Lung	lung
49	chr11:46125600-46128600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:46125800-46127200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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