Variant report

Variant	rs10240273
Chromosome Location	chr7:122081401-122081402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10236218	1.00[YRI][hapmap]
rs10248311	1.00[YRI][hapmap]
rs10257674	1.00[YRI][hapmap]
rs7789426	1.00[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122013800-122081800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:122022400-122095000	Weak transcription	Gastric	stomach
3	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
4	chr7:122056200-122122200	Weak transcription	Liver	Liver
5	chr7:122061200-122095200	Weak transcription	Aorta	Aorta
6	chr7:122078600-122082200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:122078600-122091000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:122078800-122082000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:122078800-122082200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:122078800-122084000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:122079000-122083000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:122079000-122083600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:122079200-122082200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:122079200-122082600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:122079600-122082000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:122080200-122081600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:122080400-122082000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr7:122080400-122082000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:122080400-122090600	Weak transcription	Pancreas	Pancrea
20	chr7:122080600-122081600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:122081200-122082800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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