Variant report

Variant	rs10236218
Chromosome Location	chr7:122110342-122110343
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10225954	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10236229	1.00[AFR][1000 genomes]
rs10240273	1.00[YRI][hapmap]
rs10244718	1.00[YRI][hapmap]
rs10248311	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10257674	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs10260132	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10266367	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10276116	1.00[AFR][1000 genomes]
rs7789426	1.00[YRI][hapmap]
rs7792420	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
2	chr7:122056200-122122200	Weak transcription	Liver	Liver
3	chr7:122084800-122118600	Weak transcription	Lung	lung
4	chr7:122089000-122110400	Weak transcription	HepG2	liver
5	chr7:122091400-122113000	Weak transcription	Pancreas	Pancrea
6	chr7:122091400-122130200	Weak transcription	Ovary	ovary
7	chr7:122091400-122132800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr7:122095400-122111400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:122098400-122114400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:122104600-122110800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr7:122104800-122123400	Weak transcription	Fetal Stomach	stomach
12	chr7:122109800-122110800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:122109800-122111000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:122110000-122111200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:122110000-122111200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:122110000-122111200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:122110200-122110600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr7:122110200-122110600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr7:122110200-122110600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:122110200-122110600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr7:122110200-122110600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:122110200-122111400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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