Variant report

Variant	rs10225954
Chromosome Location	chr7:122043084-122043085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:122036460..122038808-chr7:122041576..122043558,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10236218	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10236229	1.00[AFR][1000 genomes]
rs10248311	1.00[AFR][1000 genomes]
rs10257674	0.83[AFR][1000 genomes]
rs10260132	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10266367	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10276116	1.00[AFR][1000 genomes]
rs7792420	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:122003200-122061000	Weak transcription	Aorta	Aorta
3	chr7:122007400-122073000	Weak transcription	Lung	lung
4	chr7:122013800-122081800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:122017400-122055200	Weak transcription	Liver	Liver
6	chr7:122022200-122052800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:122022400-122095000	Weak transcription	Gastric	stomach
8	chr7:122023800-122050000	Weak transcription	Right Ventricle	heart
9	chr7:122024200-122046600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr7:122024400-122045400	Weak transcription	Ovary	ovary
11	chr7:122026000-122046600	Weak transcription	Left Ventricle	heart
12	chr7:122026000-122052400	Weak transcription	Fetal Lung	lung
13	chr7:122027200-122052800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:122033600-122061000	Weak transcription	Pancreas	Pancrea
15	chr7:122037800-122046800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr7:122038000-122046600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr7:122040600-122057800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr7:122041200-122043200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr7:122041400-122043400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr7:122041600-122043400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:122041600-122043400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr7:122041600-122043600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr7:122041800-122043200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr7:122041800-122043400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:122042000-122043200	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr7:122042000-122043400	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr7:122042000-122047200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:122042000-122047400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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