Variant report

Variant	rs10248311
Chromosome Location	chr7:122146857-122146858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10225954	1.00[AFR][1000 genomes]
rs10236218	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10236229	1.00[AFR][1000 genomes]
rs10240273	1.00[YRI][hapmap]
rs10257674	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs10260132	1.00[AFR][1000 genomes]
rs10266367	1.00[AFR][1000 genomes]
rs10276116	1.00[AFR][1000 genomes]
rs7789426	1.00[YRI][hapmap]
rs7792420	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
2	chr7:122138200-122155400	Weak transcription	Gastric	stomach
3	chr7:122140200-122159000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:122146200-122155400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:122146200-122155600	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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