Variant report

Variant	rs10241793
Chromosome Location	chr7:80934561-80934562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:80933949..80937160-chr7:80938346..80942682,5	MCF-7	breast:
2	chr7:80546595..80553605-chr7:80929864..80935608,10	MCF-7	breast:
3	chr7:80926765..80932056-chr7:80932265..80936862,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075223	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs1014079	0.81[YRI][hapmap]
rs10241623	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245449	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10254331	1.00[ASN][1000 genomes]
rs10275669	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1029493	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1029494	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761451	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770496	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771361	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773641	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707335	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707336	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707337	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707338	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13229188	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13246684	1.00[CEU][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13247272	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397014	1.00[ASN][1000 genomes]
rs1509914	1.00[ASN][1000 genomes]
rs1509915	1.00[ASN][1000 genomes]
rs1509916	1.00[ASN][1000 genomes]
rs17154960	1.00[ASN][1000 genomes]
rs17154968	1.00[ASN][1000 genomes]
rs17154971	1.00[ASN][1000 genomes]
rs17154974	1.00[ASN][1000 genomes]
rs17154980	1.00[ASN][1000 genomes]
rs17155004	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155008	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17625910	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1848788	1.00[ASN][1000 genomes]
rs1848789	1.00[ASN][1000 genomes]
rs1848790	1.00[ASN][1000 genomes]
rs1912365	1.00[ASN][1000 genomes]
rs2136609	1.00[ASN][1000 genomes]
rs2189563	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2189564	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214550	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2262987	1.00[ASN][1000 genomes]
rs2262988	1.00[ASN][1000 genomes]
rs2525775	1.00[ASN][1000 genomes]
rs2525778	1.00[ASN][1000 genomes]
rs2525781	1.00[ASN][1000 genomes]
rs2525782	1.00[ASN][1000 genomes]
rs2525783	1.00[ASN][1000 genomes]
rs2525785	1.00[ASN][1000 genomes]
rs2525786	1.00[ASN][1000 genomes]
rs2525788	1.00[ASN][1000 genomes]
rs2525789	1.00[ASN][1000 genomes]
rs2525790	1.00[ASN][1000 genomes]
rs2525794	1.00[ASN][1000 genomes]
rs2664840	1.00[ASN][1000 genomes]
rs2664842	1.00[ASN][1000 genomes]
rs2664843	1.00[ASN][1000 genomes]
rs2664844	1.00[ASN][1000 genomes]
rs2664847	1.00[ASN][1000 genomes]
rs2664849	1.00[ASN][1000 genomes]
rs2839799	1.00[ASN][1000 genomes]
rs325977	1.00[ASN][1000 genomes]
rs325978	1.00[ASN][1000 genomes]
rs325979	1.00[ASN][1000 genomes]
rs325980	1.00[ASN][1000 genomes]
rs325983	1.00[ASN][1000 genomes]
rs325985	1.00[ASN][1000 genomes]
rs325988	1.00[ASN][1000 genomes]
rs34317276	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35315784	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35786870	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57688291	1.00[ASN][1000 genomes]
rs57801190	1.00[ASN][1000 genomes]
rs58355397	1.00[ASN][1000 genomes]
rs58557721	1.00[ASN][1000 genomes]
rs59574622	1.00[ASN][1000 genomes]
rs59748947	1.00[ASN][1000 genomes]
rs60587791	1.00[ASN][1000 genomes]
rs60806663	1.00[ASN][1000 genomes]
rs61420690	1.00[ASN][1000 genomes]
rs61705873	1.00[ASN][1000 genomes]
rs6944017	1.00[ASN][1000 genomes]
rs6956118	1.00[ASN][1000 genomes]
rs6957571	1.00[ASN][1000 genomes]
rs6963937	1.00[ASN][1000 genomes]
rs6973407	1.00[ASN][1000 genomes]
rs6976487	1.00[ASN][1000 genomes]
rs6979842	1.00[ASN][1000 genomes]
rs6979856	1.00[ASN][1000 genomes]
rs73380421	1.00[ASN][1000 genomes]
rs73380423	1.00[ASN][1000 genomes]
rs73380440	1.00[ASN][1000 genomes]
rs73380442	1.00[ASN][1000 genomes]
rs73380451	1.00[ASN][1000 genomes]
rs73380464	1.00[ASN][1000 genomes]
rs73382432	1.00[ASN][1000 genomes]
rs73709691	1.00[ASN][1000 genomes]
rs7783631	1.00[ASN][1000 genomes]
rs7785746	1.00[ASN][1000 genomes]
rs7790316	0.91[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7792835	1.00[ASN][1000 genomes]
rs7812268	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs976329	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1029034	chr7:80838012-81137146	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv831045	chr7:80841693-81012404	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv464608	chr7:80866153-80938045	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv607687	chr7:80866153-80938045	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv607688	chr7:80870379-80947517	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80929400-80938000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:80929800-80938000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:80930000-80937800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:80930000-80937800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:80930000-80937800	Weak transcription	NHLF	lung
6	chr7:80930000-80938200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:80930000-80961000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:80930200-80937800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:80930400-80938000	Weak transcription	A549	lung
10	chr7:80932800-80938000	Weak transcription	Fetal Intestine Large	intestine
11	chr7:80934200-80937800	Weak transcription	Stomach Mucosa	stomach

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