Variant report

Variant	rs34317276
Chromosome Location	chr7:80924167-80924168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80546885..80549925-chr7:80922989..80924941,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075223	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10241623	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10241793	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10245449	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10275669	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1029493	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1029494	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11761451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11770496	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11771361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11773641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12707335	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12707336	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12707337	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12707338	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13229188	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13246684	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13247272	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17155004	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17155008	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17625910	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2189563	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2189564	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2214550	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35315784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35786870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73380464	0.82[AFR][1000 genomes]
rs73382432	0.82[AFR][1000 genomes]
rs7790316	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7812268	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1023149	chr7:80817550-80928090	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1029034	chr7:80838012-81137146	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831045	chr7:80841693-81012404	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv464608	chr7:80866153-80938045	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv607687	chr7:80866153-80938045	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv607688	chr7:80870379-80947517	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80913200-80928800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:80914400-80928000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:80921800-80927800	Weak transcription	Fetal Intestine Small	intestine
4	chr7:80923400-80928200	Weak transcription	HSMMtube	muscle

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