Variant report

Variant	rs17625910
Chromosome Location	chr7:80913453-80913454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs1014079	0.86[YRI][hapmap]
rs10241623	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241793	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245449	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10254331	1.00[ASN][1000 genomes]
rs10275669	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1029493	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1029494	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761451	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770496	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771361	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773641	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707335	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707336	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707337	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707338	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13229188	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13246684	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13247272	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397014	1.00[ASN][1000 genomes]
rs1509914	1.00[ASN][1000 genomes]
rs1509915	1.00[ASN][1000 genomes]
rs1509916	1.00[ASN][1000 genomes]
rs17154960	1.00[ASN][1000 genomes]
rs17154968	1.00[ASN][1000 genomes]
rs17154971	1.00[ASN][1000 genomes]
rs17154974	1.00[ASN][1000 genomes]
rs17154980	1.00[ASN][1000 genomes]
rs17155004	1.00[CEU][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155008	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1848788	1.00[ASN][1000 genomes]
rs1848789	1.00[ASN][1000 genomes]
rs1848790	1.00[ASN][1000 genomes]
rs1912365	1.00[ASN][1000 genomes]
rs2136609	1.00[ASN][1000 genomes]
rs2189563	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2189564	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214550	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2262987	1.00[ASN][1000 genomes]
rs2262988	1.00[ASN][1000 genomes]
rs2525775	1.00[ASN][1000 genomes]
rs2525778	1.00[ASN][1000 genomes]
rs2525781	1.00[ASN][1000 genomes]
rs2525782	1.00[ASN][1000 genomes]
rs2525783	1.00[ASN][1000 genomes]
rs2525785	1.00[ASN][1000 genomes]
rs2525786	1.00[ASN][1000 genomes]
rs2525788	1.00[ASN][1000 genomes]
rs2525789	1.00[ASN][1000 genomes]
rs2525790	1.00[ASN][1000 genomes]
rs2525794	1.00[ASN][1000 genomes]
rs2664840	1.00[ASN][1000 genomes]
rs2664842	1.00[ASN][1000 genomes]
rs2664843	1.00[ASN][1000 genomes]
rs2664844	1.00[ASN][1000 genomes]
rs2664847	1.00[ASN][1000 genomes]
rs2664849	1.00[ASN][1000 genomes]
rs2839799	1.00[ASN][1000 genomes]
rs325977	1.00[ASN][1000 genomes]
rs325978	1.00[ASN][1000 genomes]
rs325979	1.00[ASN][1000 genomes]
rs325980	1.00[ASN][1000 genomes]
rs325983	1.00[ASN][1000 genomes]
rs325985	1.00[ASN][1000 genomes]
rs325988	1.00[ASN][1000 genomes]
rs34317276	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35315784	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35786870	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57688291	1.00[ASN][1000 genomes]
rs57801190	1.00[ASN][1000 genomes]
rs58355397	1.00[ASN][1000 genomes]
rs58557721	1.00[ASN][1000 genomes]
rs59574622	1.00[ASN][1000 genomes]
rs59748947	1.00[ASN][1000 genomes]
rs60587791	1.00[ASN][1000 genomes]
rs60806663	1.00[ASN][1000 genomes]
rs61420690	1.00[ASN][1000 genomes]
rs61705873	1.00[ASN][1000 genomes]
rs6944017	1.00[ASN][1000 genomes]
rs6956118	1.00[ASN][1000 genomes]
rs6957571	1.00[ASN][1000 genomes]
rs6963937	1.00[ASN][1000 genomes]
rs6973407	1.00[ASN][1000 genomes]
rs6976487	1.00[ASN][1000 genomes]
rs6979842	1.00[ASN][1000 genomes]
rs6979856	1.00[ASN][1000 genomes]
rs73380421	1.00[ASN][1000 genomes]
rs73380423	1.00[ASN][1000 genomes]
rs73380440	1.00[ASN][1000 genomes]
rs73380442	1.00[ASN][1000 genomes]
rs73380451	1.00[ASN][1000 genomes]
rs73380464	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73382432	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73709691	1.00[ASN][1000 genomes]
rs7783631	1.00[ASN][1000 genomes]
rs7785746	1.00[ASN][1000 genomes]
rs7790316	0.91[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7792835	1.00[ASN][1000 genomes]
rs7812268	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs976329	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888557	chr7:80813081-80917148	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1023149	chr7:80817550-80928090	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1029034	chr7:80838012-81137146	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv831045	chr7:80841693-81012404	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv888558	chr7:80844667-80917148	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv607686	chr7:80857196-80917148	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv464608	chr7:80866153-80938045	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv607687	chr7:80866153-80938045	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv888559	chr7:80870379-80917148	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv607688	chr7:80870379-80947517	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80912800-80914200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:80912800-80914400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:80912800-80914800	Enhancers	NHEK	skin
4	chr7:80912800-80915000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:80912800-80915000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:80913000-80913600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:80913000-80914000	Enhancers	NH-A	brain
8	chr7:80913000-80914200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:80913000-80914400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:80913000-80914400	Enhancers	HSMM	muscle
11	chr7:80913000-80914400	Enhancers	Osteobl	bone
12	chr7:80913000-80915000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:80913000-80915000	Enhancers	Hela-S3	cervix
14	chr7:80913000-80915200	Enhancers	HMEC	breast
15	chr7:80913200-80913800	Weak transcription	HSMMtube	muscle
16	chr7:80913200-80914200	Enhancers	NHDF-Ad	bronchial
17	chr7:80913200-80928800	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links