Variant report

Variant	rs10241803
Chromosome Location	chr7:39267720-39267721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10240990	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10241425	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10253095	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10268316	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10272458	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11764181	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12531437	0.87[ASN][1000 genomes]
rs12531464	0.87[ASN][1000 genomes]
rs12534084	0.87[ASN][1000 genomes]
rs12536501	0.87[ASN][1000 genomes]
rs35489214	0.85[ASN][1000 genomes]
rs35792719	0.86[ASN][1000 genomes]
rs3923506	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3924710	0.86[ASN][1000 genomes]
rs4279508	0.87[ASN][1000 genomes]
rs4398807	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4401749	0.87[ASN][1000 genomes]
rs4472423	0.87[ASN][1000 genomes]
rs4473925	0.87[ASN][1000 genomes]
rs4720314	0.87[ASN][1000 genomes]
rs4720315	0.87[ASN][1000 genomes]
rs56395837	0.86[ASN][1000 genomes]
rs59249283	0.84[ASN][1000 genomes]
rs61003868	0.87[ASN][1000 genomes]
rs6955619	0.86[ASN][1000 genomes]
rs6955746	0.86[ASN][1000 genomes]
rs6955924	0.86[ASN][1000 genomes]
rs6975659	0.86[ASN][1000 genomes]
rs73697515	0.87[ASN][1000 genomes]
rs7783839	0.86[ASN][1000 genomes]
rs7783932	0.86[ASN][1000 genomes]
rs7784092	0.84[ASN][1000 genomes]
rs7787466	0.86[ASN][1000 genomes]
rs7787601	0.86[ASN][1000 genomes]
rs7795617	0.84[ASN][1000 genomes]
rs7802746	0.86[ASN][1000 genomes]
rs7806520	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830968	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv428163	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39263400-39268000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:39264200-39268000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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