Variant report

Variant	rs4398807
Chromosome Location	chr7:39272430-39272431
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10240990	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10241425	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10241803	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10253095	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10268316	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10272458	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11764181	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12531437	1.00[CHD][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs12531464	1.00[CHD][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs12534084	1.00[CHD][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs12536501	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs35489214	0.87[ASN][1000 genomes]
rs35792719	0.88[ASN][1000 genomes]
rs3923506	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3924710	1.00[CHD][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs4279508	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs4401749	1.00[CHD][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs4472423	0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs4473925	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs4720314	0.89[ASN][1000 genomes]
rs4720315	1.00[CHD][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs56395837	0.88[ASN][1000 genomes]
rs59249283	0.86[ASN][1000 genomes]
rs61003868	0.89[ASN][1000 genomes]
rs6462896	0.81[ASW][hapmap];0.88[CEU][hapmap];0.81[TSI][hapmap]
rs6954406	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs6955619	0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs6955746	0.88[ASN][1000 genomes]
rs6955924	0.88[ASN][1000 genomes]
rs6966337	0.81[ASW][hapmap];0.88[CEU][hapmap];0.81[TSI][hapmap]
rs6975659	0.88[ASN][1000 genomes]
rs73697515	0.89[ASN][1000 genomes]
rs7783839	0.88[ASN][1000 genomes]
rs7783932	0.88[ASN][1000 genomes]
rs7784092	1.00[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs7787466	1.00[CHD][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs7787601	0.88[ASN][1000 genomes]
rs7795617	0.86[ASN][1000 genomes]
rs7802746	1.00[CHD][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs7806520	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830968	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv428163	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39269400-39276800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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