Variant report

Variant	rs10244131
Chromosome Location	chr7:3800733-3800734
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3793998..3797473-chr7:3798195..3801316,4	MCF-7	breast:

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10226220	1.00[AMR][1000 genomes]
rs10227277	1.00[AMR][1000 genomes]
rs10230252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231172	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232161	1.00[AMR][1000 genomes]
rs10232222	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232460	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232479	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10233053	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235415	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10236208	1.00[AMR][1000 genomes]
rs10236726	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237072	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237207	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237489	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237769	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238790	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239119	1.00[AMR][1000 genomes]
rs10239349	1.00[AMR][1000 genomes]
rs10239755	1.00[AMR][1000 genomes]
rs10240271	1.00[AMR][1000 genomes]
rs10240744	1.00[AFR][1000 genomes]
rs10240764	1.00[AMR][1000 genomes]
rs10240770	1.00[AMR][1000 genomes]
rs10240776	1.00[AMR][1000 genomes]
rs10244910	1.00[AMR][1000 genomes]
rs10246377	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10247342	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248032	1.00[AMR][1000 genomes]
rs10249486	1.00[AMR][1000 genomes]
rs10250749	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250969	1.00[AMR][1000 genomes]
rs10250990	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253717	1.00[AMR][1000 genomes]
rs10254515	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254942	1.00[AMR][1000 genomes]
rs10255847	1.00[AFR][1000 genomes]
rs10259149	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259421	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259908	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260973	1.00[AMR][1000 genomes]
rs10261101	1.00[AMR][1000 genomes]
rs10262755	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10262756	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10264034	1.00[AMR][1000 genomes]
rs10264365	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10265854	1.00[AMR][1000 genomes]
rs10266546	1.00[AMR][1000 genomes]
rs10269303	1.00[AFR][1000 genomes]
rs10269554	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10269925	1.00[AMR][1000 genomes]
rs10271348	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271361	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271525	1.00[AMR][1000 genomes]
rs10274442	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274450	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275943	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277140	1.00[AMR][1000 genomes]
rs10277615	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277730	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281035	1.00[AMR][1000 genomes]
rs10281383	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10282240	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10282727	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10479827	1.00[AMR][1000 genomes]
rs10479828	1.00[AMR][1000 genomes]
rs11505318	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11505319	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11505320	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11505321	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11505480	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11505481	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333365	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333373	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333491	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333534	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333847	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333850	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333854	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28408018	1.00[AMR][1000 genomes]
rs28491068	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28496653	1.00[AMR][1000 genomes]
rs28507850	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28532947	1.00[AMR][1000 genomes]
rs28541657	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28554772	1.00[AMR][1000 genomes]
rs28558397	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28560779	1.00[AMR][1000 genomes]
rs28563149	1.00[AMR][1000 genomes]
rs28568652	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28570515	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28578945	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28581916	1.00[AMR][1000 genomes]
rs28587155	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28593083	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28656287	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28656426	1.00[AMR][1000 genomes]
rs28692586	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28715920	1.00[AMR][1000 genomes]
rs28753192	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28765162	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28833830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28839918	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28846162	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28856279	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28884793	1.00[AMR][1000 genomes]
rs57744825	1.00[AMR][1000 genomes]
rs58738480	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59292244	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60243310	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60409549	1.00[AMR][1000 genomes]
rs9655002	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9655328	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9655329	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9655341	1.00[AMR][1000 genomes]
rs9655342	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1017868	chr7:3698885-3820159	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1021443	chr7:3705273-3889334	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1019582	chr7:3718061-3814514	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv538682	chr7:3718061-3814514	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1022650	chr7:3723035-3847680	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1024704	chr7:3736254-3831859	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1031610	chr7:3744536-3838844	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1031999	chr7:3782751-3847680	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv538683	chr7:3782751-3847680	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv2756505	chr7:3789992-3856544	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv605937	chr7:3792038-3836379	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv605938	chr7:3792038-3852261	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1024292	chr7:3792949-3838578	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3773000-3820000	Weak transcription	Pancreas	Pancrea
2	chr7:3792800-3801800	Weak transcription	Gastric	stomach
3	chr7:3794400-3801800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:3795600-3801600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:3799800-3802000	Enhancers	Fetal Lung	lung
6	chr7:3799800-3802400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:3800000-3807000	Weak transcription	Brain Angular Gyrus	brain
8	chr7:3800200-3800800	Enhancers	Colon Smooth Muscle	Colon
9	chr7:3800200-3800800	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr7:3800200-3801000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr7:3800400-3801000	Enhancers	Stomach Mucosa	stomach
12	chr7:3800400-3801400	Weak transcription	HSMM	muscle
13	chr7:3800400-3801800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:3800400-3801800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:3800400-3802000	Enhancers	HSMMtube	muscle
16	chr7:3800600-3801000	Enhancers	A549	lung
17	chr7:3800600-3801600	Weak transcription	Fetal Kidney	kidney
18	chr7:3800600-3801800	Weak transcription	NHDF-Ad	bronchial
19	chr7:3800600-3802000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:3800600-3802200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:3800600-3802200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:3800600-3802400	Enhancers	NH-A	brain

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