Variant report

Variant	rs10253717
Chromosome Location	chr7:3769997-3769998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10227277	1.00[AMR][1000 genomes]
rs10230252	1.00[AMR][1000 genomes]
rs10231172	1.00[AMR][1000 genomes]
rs10232222	1.00[AMR][1000 genomes]
rs10232460	1.00[AMR][1000 genomes]
rs10232479	1.00[AMR][1000 genomes]
rs10233053	1.00[AMR][1000 genomes]
rs10235415	1.00[AMR][1000 genomes]
rs10236208	1.00[AMR][1000 genomes]
rs10236726	1.00[AMR][1000 genomes]
rs10237072	1.00[AMR][1000 genomes]
rs10237207	1.00[AMR][1000 genomes]
rs10237489	1.00[AMR][1000 genomes]
rs10237769	1.00[AMR][1000 genomes]
rs10238790	1.00[AMR][1000 genomes]
rs10240271	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10244131	1.00[AMR][1000 genomes]
rs10244910	1.00[AMR][1000 genomes]
rs10246377	1.00[AMR][1000 genomes]
rs10247342	1.00[AMR][1000 genomes]
rs10250749	1.00[AMR][1000 genomes]
rs10250969	1.00[AMR][1000 genomes]
rs10250990	1.00[AMR][1000 genomes]
rs10252145	1.00[AMR][1000 genomes]
rs10254515	1.00[AMR][1000 genomes]
rs10259149	1.00[AMR][1000 genomes]
rs10259421	1.00[AMR][1000 genomes]
rs10259908	1.00[AMR][1000 genomes]
rs10260973	1.00[AMR][1000 genomes]
rs10261101	1.00[AMR][1000 genomes]
rs10262755	1.00[AMR][1000 genomes]
rs10262756	1.00[AMR][1000 genomes]
rs10264034	1.00[AMR][1000 genomes]
rs10264365	1.00[AMR][1000 genomes]
rs10265854	1.00[AMR][1000 genomes]
rs10266546	1.00[AMR][1000 genomes]
rs10269554	1.00[AMR][1000 genomes]
rs10269925	1.00[AMR][1000 genomes]
rs10271348	1.00[AMR][1000 genomes]
rs10271361	1.00[AMR][1000 genomes]
rs10271525	1.00[AMR][1000 genomes]
rs10274442	1.00[AMR][1000 genomes]
rs10274450	1.00[AMR][1000 genomes]
rs10275943	1.00[AMR][1000 genomes]
rs10277615	1.00[AMR][1000 genomes]
rs10277730	1.00[AMR][1000 genomes]
rs10281383	1.00[AMR][1000 genomes]
rs10282240	1.00[AMR][1000 genomes]
rs10282727	1.00[AMR][1000 genomes]
rs10479827	1.00[AMR][1000 genomes]
rs10479828	1.00[AMR][1000 genomes]
rs11505318	1.00[AMR][1000 genomes]
rs11505319	1.00[AMR][1000 genomes]
rs11505320	1.00[AMR][1000 genomes]
rs11505321	1.00[AMR][1000 genomes]
rs11505480	1.00[AMR][1000 genomes]
rs11505481	1.00[AMR][1000 genomes]
rs12333365	1.00[AMR][1000 genomes]
rs12333373	1.00[AMR][1000 genomes]
rs12333491	1.00[AMR][1000 genomes]
rs12333534	1.00[AMR][1000 genomes]
rs12333847	1.00[AMR][1000 genomes]
rs12333850	1.00[AMR][1000 genomes]
rs12333854	1.00[AMR][1000 genomes]
rs28491068	1.00[AMR][1000 genomes]
rs28496653	1.00[AMR][1000 genomes]
rs28507850	1.00[AMR][1000 genomes]
rs28541657	1.00[AMR][1000 genomes]
rs28558397	1.00[AMR][1000 genomes]
rs28563149	1.00[AMR][1000 genomes]
rs28568652	1.00[AMR][1000 genomes]
rs28570515	1.00[AMR][1000 genomes]
rs28578945	1.00[AMR][1000 genomes]
rs28587155	1.00[AMR][1000 genomes]
rs28593083	1.00[AMR][1000 genomes]
rs28656287	1.00[AMR][1000 genomes]
rs28692586	1.00[AMR][1000 genomes]
rs28753192	1.00[AMR][1000 genomes]
rs28765162	1.00[AMR][1000 genomes]
rs28833830	1.00[AMR][1000 genomes]
rs28839918	1.00[AMR][1000 genomes]
rs28846162	1.00[AMR][1000 genomes]
rs28856279	1.00[AMR][1000 genomes]
rs28884793	1.00[AMR][1000 genomes]
rs57744825	1.00[AMR][1000 genomes]
rs58738480	1.00[AMR][1000 genomes]
rs59292244	1.00[AMR][1000 genomes]
rs60243310	1.00[AMR][1000 genomes]
rs9655002	1.00[AMR][1000 genomes]
rs9655328	1.00[AMR][1000 genomes]
rs9655329	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv830888	chr7:3577214-3776276	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1017868	chr7:3698885-3820159	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1021443	chr7:3705273-3889334	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv605935	chr7:3713194-3799580	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1019582	chr7:3718061-3814514	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv538682	chr7:3718061-3814514	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1022650	chr7:3723035-3847680	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1024704	chr7:3736254-3831859	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1031610	chr7:3744536-3838844	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3755200-3770200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:3762400-3777000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:3762800-3770000	Weak transcription	Brain Substantia Nigra	brain
4	chr7:3763000-3772800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:3769000-3770000	Enhancers	Fetal Muscle Leg	muscle
6	chr7:3769400-3770000	Enhancers	Fetal Lung	lung
7	chr7:3769600-3770000	Enhancers	Brain Angular Gyrus	brain
8	chr7:3769600-3770200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:3769600-3770200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr7:3769600-3770600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr7:3769600-3770600	Enhancers	Brain Cingulate Gyrus	brain
12	chr7:3769600-3770600	Enhancers	Fetal Brain Male	brain
13	chr7:3769800-3770200	Enhancers	Brain Anterior Caudate	brain
14	chr7:3769800-3770200	Enhancers	Brain Germinal Matrix	brain
15	chr7:3769800-3770200	Enhancers	Brain Hippocampus Middle	brain
16	chr7:3769800-3770200	Enhancers	Colon Smooth Muscle	Colon
17	chr7:3769800-3770200	Enhancers	HSMMtube	muscle
18	chr7:3769800-3770400	Enhancers	Fetal Stomach	stomach

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