Variant report

Variant	rs10252145
Chromosome Location	chr7:3809548-3809549
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10226220	1.00[AMR][1000 genomes]
rs10227277	1.00[AMR][1000 genomes]
rs10230252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231172	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232161	1.00[AMR][1000 genomes]
rs10232222	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232460	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232479	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10233053	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235415	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10236208	1.00[AMR][1000 genomes]
rs10236726	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237072	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237207	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237489	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237769	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238790	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239119	1.00[AMR][1000 genomes]
rs10239349	1.00[AMR][1000 genomes]
rs10239755	1.00[AMR][1000 genomes]
rs10240271	1.00[AMR][1000 genomes]
rs10240744	1.00[AFR][1000 genomes]
rs10240764	1.00[AMR][1000 genomes]
rs10240770	1.00[AMR][1000 genomes]
rs10240776	1.00[AMR][1000 genomes]
rs10241150	1.00[YRI][hapmap]
rs10244131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10244910	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10246377	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10247342	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248032	1.00[AMR][1000 genomes]
rs10249486	1.00[AMR][1000 genomes]
rs10250749	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250969	1.00[AMR][1000 genomes]
rs10250990	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253717	1.00[AMR][1000 genomes]
rs10254515	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254942	1.00[AMR][1000 genomes]
rs10255847	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10256746	1.00[YRI][hapmap]
rs10259149	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259421	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259840	1.00[YRI][hapmap]
rs10259908	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260110	1.00[YRI][hapmap]
rs10260973	1.00[AMR][1000 genomes]
rs10261101	1.00[AMR][1000 genomes]
rs10262755	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10262756	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10264034	1.00[AMR][1000 genomes]
rs10264365	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10265854	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10266546	1.00[AMR][1000 genomes]
rs10269303	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10269554	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10269925	1.00[AMR][1000 genomes]
rs10270639	1.00[YRI][hapmap]
rs10271348	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271361	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271525	1.00[AMR][1000 genomes]
rs10274442	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274450	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275943	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277140	1.00[AMR][1000 genomes]
rs10277615	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277730	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281035	1.00[AMR][1000 genomes]
rs10281383	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10282240	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10282727	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10479827	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10479828	1.00[AMR][1000 genomes]
rs11505318	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11505319	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11505320	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11505321	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11505480	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11505481	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333365	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333373	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333491	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333534	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333847	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333850	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333854	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28408018	1.00[AMR][1000 genomes]
rs28462157	1.00[AMR][1000 genomes]
rs28491068	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28496653	1.00[AMR][1000 genomes]
rs28507850	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28532947	1.00[AMR][1000 genomes]
rs28541657	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28554772	1.00[AMR][1000 genomes]
rs28558397	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28560779	1.00[AMR][1000 genomes]
rs28563149	1.00[AMR][1000 genomes]
rs28568652	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28570515	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28578945	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28581916	1.00[AMR][1000 genomes]
rs28587155	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28593083	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28656287	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28656426	1.00[AMR][1000 genomes]
rs28692586	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28715920	1.00[AMR][1000 genomes]
rs28753192	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28765162	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28833830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28839918	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28846162	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28856279	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28884793	1.00[AMR][1000 genomes]
rs57744825	1.00[AMR][1000 genomes]
rs58738480	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59292244	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60243310	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60409549	1.00[AMR][1000 genomes]
rs9655002	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9655324	1.00[YRI][hapmap]
rs9655326	1.00[YRI][hapmap]
rs9655328	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9655329	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9655341	1.00[AMR][1000 genomes]
rs9655342	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1017868	chr7:3698885-3820159	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1021443	chr7:3705273-3889334	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1019582	chr7:3718061-3814514	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv538682	chr7:3718061-3814514	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1022650	chr7:3723035-3847680	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1024704	chr7:3736254-3831859	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1031610	chr7:3744536-3838844	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1031999	chr7:3782751-3847680	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv538683	chr7:3782751-3847680	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv2756505	chr7:3789992-3856544	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv605937	chr7:3792038-3836379	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv605938	chr7:3792038-3852261	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1024292	chr7:3792949-3838578	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1027624	chr7:3808366-3923408	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv538684	chr7:3808366-3923408	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3478233	chr7:3809257-3810635	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
22	esv3498002	chr7:3809333-3810641	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
23	esv3498003	chr7:3809369-3810492	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
24	esv3324626	chr7:3809372-3810527	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
25	esv3478234	chr7:3809449-3810592	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3773000-3820000	Weak transcription	Pancreas	Pancrea
2	chr7:3802000-3810400	Weak transcription	Aorta	Aorta
3	chr7:3809400-3809600	Enhancers	Fetal Brain Male	brain

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