Variant report

Variant	rs10244449
Chromosome Location	chr7:26707136-26707137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:26408877..26409777-chr7:26706557..26707867,5	K562	blood:
2	chr7:26705980..26708801-chr7:26709230..26711204,3	K562	blood:
3	chr7:26416346..26417264-chr7:26706784..26707684,6	MCF-7	breast:
4	chr7:26588899..26589576-chr7:26706937..26707768,2	MCF-7	breast:
5	chr7:26416040..26417569-chr7:26706693..26708540,2	MCF-7	breast:
6	chr7:26407824..26409906-chr7:26706446..26707818,12	MCF-7	breast:
7	chr7:26416373..26417270-chr7:26706909..26707815,11	MCF-7	breast:
8	chr7:26624734..26625596-chr7:26706998..26707945,8	MCF-7	breast:
9	chr7:25932106..25933106-chr7:26707000..26708058,3	K562	blood:
10	chr7:26547193..26547730-chr7:26706946..26707534,2	MCF-7	breast:
11	chr7:26705980..26708801-chr7:26709438..26711204,2	K562	blood:
12	chr7:26408832..26410672-chr7:26706732..26707750,14	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C7orf71-4	chr7:26707003-26707486	NONHSAT119656

No data

Variant related genes	Relation type
ENSG00000086300	Chromatin interaction
ENSG00000225792	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10231663	1.00[MEX][hapmap]
rs10244663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248592	1.00[MEX][hapmap]
rs10258711	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs10258868	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs10274472	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275412	0.80[AFR][1000 genomes]
rs17154295	1.00[MEX][hapmap]
rs17154348	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1020378	chr7:26679880-26733872	Bivalent Enhancer Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26678800-26715400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:26679400-26710000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:26696800-26708000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:26702200-26707800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:26703400-26709600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr7:26704800-26707200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr7:26704800-26712800	Weak transcription	Primary B cells from cord blood	blood
8	chr7:26705000-26707200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:26705000-26707200	Enhancers	Adipose Nuclei	Adipose
10	chr7:26705000-26707800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr7:26705000-26714600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:26705000-26714600	Weak transcription	NHLF	lung
13	chr7:26705000-26716000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr7:26705000-26759600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr7:26705200-26707200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:26705200-26707400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:26705200-26707600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr7:26705400-26707200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr7:26706000-26707200	Weak transcription	Dnd41	blood
20	chr7:26706400-26707200	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr7:26706400-26707600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:26706400-26707600	Enhancers	Brain Germinal Matrix	brain
23	chr7:26706800-26707600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr7:26706800-26708200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr7:26707000-26707200	Enhancers	Fetal Lung	lung
26	chr7:26707000-26707400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:26707000-26707400	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr7:26707000-26707600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr7:26707000-26707600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr7:26707000-26707600	Enhancers	Liver	Liver
31	chr7:26707000-26707600	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr7:26707000-26707600	Enhancers	Fetal Kidney	kidney
33	chr7:26707000-26707600	Enhancers	Hela-S3	cervix
34	chr7:26707000-26707600	Enhancers	HUVEC	blood vessel
35	chr7:26707000-26707600	Enhancers	NHEK	skin
36	chr7:26707000-26707800	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr7:26707000-26707800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr7:26707000-26707800	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr7:26707000-26707800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr7:26707000-26707800	Enhancers	Brain Anterior Caudate	brain
41	chr7:26707000-26709600	Enhancers	Primary hematopoietic stem cells	blood

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