Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10231663	1.00[MEX][hapmap]
rs10231691	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10244132	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10244449	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs10246483	0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs10248592	1.00[MEX][hapmap]
rs10254460	0.84[YRI][hapmap];0.82[AFR][1000 genomes]
rs10257194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258868	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10265721	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274472	1.00[GIH][hapmap]
rs10486476	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11772673	0.91[LWK][hapmap]
rs12334046	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17154295	1.00[MEX][hapmap]
rs17154348	1.00[MEX][hapmap]
rs17154428	0.84[AFR][1000 genomes]
rs2391357	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2391358	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28414527	0.84[AFR][1000 genomes]
rs4141345	0.84[YRI][hapmap];0.84[AFR][1000 genomes]
rs7783807	0.91[LWK][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes]
rs7784380	0.91[LWK][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10258711	PLA2G4C	trans	lymphoblastoid	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26750400-26812000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:26779600-26810600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:26779800-26809000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr7:26781000-26809200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr7:26796000-26808800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:26797800-26809400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:26797800-26812000	Weak transcription	Fetal Lung	lung
8	chr7:26798200-26809400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:26799600-26809400	Weak transcription	Primary B cells from cord blood	blood
10	chr7:26799800-26812000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:26800800-26809400	Weak transcription	Primary hematopoietic stem cells	blood

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