Variant report

Variant	rs10258868
Chromosome Location	chr7:26803724-26803725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10231663	1.00[MEX][hapmap]
rs10231691	0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232327	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10244132	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10244449	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs10248592	1.00[MEX][hapmap]
rs10257194	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258711	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10265721	0.94[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274472	1.00[GIH][hapmap]
rs10486476	0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12334046	0.94[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17154295	1.00[MEX][hapmap]
rs17154348	1.00[MEX][hapmap]
rs2391357	1.00[AMR][1000 genomes]
rs2391358	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26750400-26812000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:26779600-26810600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:26779800-26809000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr7:26781000-26809200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr7:26796000-26808800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:26797800-26809400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:26797800-26812000	Weak transcription	Fetal Lung	lung
8	chr7:26798200-26809400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:26799600-26809400	Weak transcription	Primary B cells from cord blood	blood
10	chr7:26799800-26812000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:26800800-26809400	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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