Variant report

Variant	rs10245210
Chromosome Location	chr7:107078964-107078965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106845720..106848557-chr7:107077031..107079776,2	K562	blood:
2	chr7:107078024..107080245-chr7:107082230..107084596,2	K562	blood:

Extended variants
information (count: 184 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:177)

rs_ID	r²[population]
rs1015410	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1015411	0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1018869	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10224503	0.91[ASN][1000 genomes]
rs10234355	0.88[CHB][hapmap];0.94[YRI][hapmap];0.97[ASN][1000 genomes]
rs10237948	0.83[ASN][1000 genomes]
rs10243340	0.97[ASN][1000 genomes]
rs1024401	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs10244871	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs10251808	0.92[ASN][1000 genomes]
rs10258385	0.81[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10260250	0.84[CEU][hapmap]
rs10264412	0.89[ASN][1000 genomes]
rs10267907	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10267978	0.81[EUR][1000 genomes]
rs10273733	0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10274041	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10276321	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10276604	0.81[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10281535	0.81[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1072117	0.86[ASN][1000 genomes]
rs10953538	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11535285	0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11977187	0.83[CHD][hapmap];0.94[JPT][hapmap]
rs12532304	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12667527	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12668402	0.89[ASN][1000 genomes]
rs12673675	0.88[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.93[ASN][1000 genomes]
rs1468335	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs1468336	0.86[ASN][1000 genomes]
rs1544336	0.98[ASN][1000 genomes]
rs17153981	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs17154077	0.93[ASN][1000 genomes]
rs17154091	0.87[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17154104	0.97[ASN][1000 genomes]
rs1858888	0.82[ASN][1000 genomes]
rs1858889	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2023685	0.82[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2057837	0.81[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2066735	0.88[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2107317	1.00[JPT][hapmap]
rs2107713	0.81[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2178497	0.90[CHD][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs2189839	0.85[ASN][1000 genomes]
rs2237667	0.85[CEU][hapmap]
rs2237668	0.82[ASN][1000 genomes]
rs2237670	0.93[ASN][1000 genomes]
rs2237671	0.93[ASN][1000 genomes]
rs2237672	0.93[ASN][1000 genomes]
rs2237673	0.93[ASN][1000 genomes]
rs2237676	0.85[ASN][1000 genomes]
rs2237677	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2237678	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2250410	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs2250414	0.93[ASN][1000 genomes]
rs2253146	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2253269	0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2253271	0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2253833	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2253856	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs2283042	0.82[EUR][1000 genomes]
rs2293658	0.81[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2395868	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2395882	0.98[ASN][1000 genomes]
rs2395883	0.97[ASN][1000 genomes]
rs2395907	0.81[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2520241	0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2520242	0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.93[ASN][1000 genomes]
rs2520243	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[ASN][1000 genomes]
rs2520245	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[ASN][1000 genomes]
rs2520246	0.93[ASN][1000 genomes]
rs2520247	0.93[ASN][1000 genomes]
rs2520249	0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2520250	0.93[ASN][1000 genomes]
rs2520251	0.85[ASN][1000 genomes]
rs2520252	0.91[ASN][1000 genomes]
rs2520256	0.89[ASN][1000 genomes]
rs2520257	0.86[EUR][1000 genomes]
rs2520258	0.84[EUR][1000 genomes]
rs2520259	0.85[EUR][1000 genomes]
rs2520260	0.89[ASN][1000 genomes]
rs2520261	0.89[ASN][1000 genomes]
rs2520262	0.81[EUR][1000 genomes]
rs2520263	0.89[ASN][1000 genomes]
rs2520264	0.89[ASN][1000 genomes]
rs2520265	0.89[ASN][1000 genomes]
rs2520266	0.85[EUR][1000 genomes]
rs2520267	0.87[ASN][1000 genomes]
rs2520268	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2520269	0.80[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2520270	0.83[EUR][1000 genomes]
rs2520271	0.85[ASN][1000 genomes]
rs2520272	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs2520276	0.93[EUR][1000 genomes]
rs2520277	0.93[ASN][1000 genomes]
rs2520278	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2520279	0.86[ASW][hapmap];0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2712186	0.85[EUR][1000 genomes]
rs2712188	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs2712189	0.85[ASN][1000 genomes]
rs2712191	0.90[ASN][1000 genomes]
rs2712192	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2712193	0.93[ASN][1000 genomes]
rs2712194	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2712195	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2712196	0.93[ASN][1000 genomes]
rs2712197	0.93[ASN][1000 genomes]
rs2712199	0.93[ASN][1000 genomes]
rs2712200	0.93[ASN][1000 genomes]
rs2712201	0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2712203	0.84[EUR][1000 genomes]
rs2712213	0.85[EUR][1000 genomes]
rs2712214	0.89[ASN][1000 genomes]
rs2712215	0.89[ASN][1000 genomes]
rs2712217	0.85[EUR][1000 genomes]
rs2712223	0.83[EUR][1000 genomes]
rs2712224	0.89[ASN][1000 genomes]
rs2712225	0.81[EUR][1000 genomes]
rs2807	0.92[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2808	0.92[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs28410326	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28687365	0.95[ASN][1000 genomes]
rs28714607	0.95[ASN][1000 genomes]
rs2894466	0.83[ASN][1000 genomes]
rs2894475	0.92[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3094383	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs34325395	0.97[ASN][1000 genomes]
rs3779495	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3779496	0.98[EUR][1000 genomes]
rs3801944	0.81[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3801948	0.81[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3801954	0.95[ASN][1000 genomes]
rs4610672	0.88[AFR][1000 genomes]
rs4727678	0.98[ASN][1000 genomes]
rs4727679	0.98[ASN][1000 genomes]
rs4727680	0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];0.95[YRI][hapmap];0.97[ASN][1000 genomes]
rs4727681	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4727682	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs4727684	0.81[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4730237	0.81[ASN][1000 genomes]
rs4730238	0.85[ASN][1000 genomes]
rs4730243	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4730245	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[ASN][1000 genomes]
rs56967324	0.89[ASN][1000 genomes]
rs57452492	0.97[ASN][1000 genomes]
rs58052742	0.86[ASN][1000 genomes]
rs60490203	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62482543	0.97[ASN][1000 genomes]
rs62483722	0.84[ASN][1000 genomes]
rs62483723	0.83[ASN][1000 genomes]
rs62483724	0.85[EUR][1000 genomes]
rs62483725	0.86[ASN][1000 genomes]
rs62483727	0.86[ASN][1000 genomes]
rs6466172	0.87[EUR][1000 genomes]
rs6466174	0.82[EUR][1000 genomes]
rs67982599	0.95[ASN][1000 genomes]
rs6954422	0.88[CEU][hapmap]
rs6962433	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6966616	0.88[CEU][hapmap]
rs6968804	0.85[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6976607	0.81[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7778250	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7778270	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7782057	0.95[ASN][1000 genomes]
rs7785892	0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs7786186	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7786801	0.98[ASN][1000 genomes]
rs7787113	0.96[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7790534	0.89[ASN][1000 genomes]
rs7791955	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7793613	0.81[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7803102	0.81[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7805630	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7809950	0.85[ASN][1000 genomes]
rs9791733	0.80[ASN][1000 genomes]
rs986994	0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs987391	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	esv1825788	chr7:106897237-107136320	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1024793	chr7:106900877-107170312	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv1832266	chr7:106961882-107136320	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
6	nsv1019963	chr7:107033342-107188641	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv539052	chr7:107033342-107188641	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107027800-107086800	Weak transcription	Aorta	Aorta
2	chr7:107028200-107082400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:107028200-107103800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:107035800-107133000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:107037800-107102200	Weak transcription	Ovary	ovary
6	chr7:107038800-107100600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr7:107046400-107081800	Weak transcription	HSMM	muscle
8	chr7:107046800-107082200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:107050600-107102400	Weak transcription	Dnd41	blood
10	chr7:107050800-107100200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr7:107051400-107087000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:107051600-107079000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:107051600-107082600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr7:107051800-107088600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr7:107052000-107098600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr7:107052600-107126400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:107056800-107082400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:107065000-107100600	Weak transcription	Thymus	Thymus
19	chr7:107067600-107119800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr7:107068200-107098400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr7:107068400-107082400	Weak transcription	Left Ventricle	heart
22	chr7:107068400-107104000	Weak transcription	Pancreas	Pancrea
23	chr7:107069400-107086400	Weak transcription	Primary T cells from cord blood	blood
24	chr7:107072400-107100000	Weak transcription	Gastric	stomach
25	chr7:107072600-107082400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr7:107073000-107103600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr7:107074200-107081800	Weak transcription	Primary B cells from cord blood	blood
28	chr7:107074400-107090000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:107076200-107082400	Weak transcription	Fetal Intestine Small	intestine
30	chr7:107076200-107099600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr7:107076400-107082400	Weak transcription	Primary B cells from peripheral blood	blood
32	chr7:107078000-107079000	Weak transcription	Brain Angular Gyrus	brain
33	chr7:107078400-107092400	Weak transcription	Fetal Thymus	thymus
34	chr7:107078800-107079200	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr7:107078800-107079600	Enhancers	Brain Hippocampus Middle	brain
36	chr7:107078800-107092400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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