Variant report

Variant	rs10276321
Chromosome Location	chr7:107091321-107091322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1015410	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1018869	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1024401	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10244871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10245210	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10267978	0.90[EUR][1000 genomes]
rs10953538	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761775	0.81[TSI][hapmap]
rs12532304	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534598	0.81[TSI][hapmap]
rs1468335	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1858889	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2250410	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2253856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2283042	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2520257	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2520258	0.94[EUR][1000 genomes]
rs2520259	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2520262	0.90[EUR][1000 genomes]
rs2520266	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2520270	0.91[EUR][1000 genomes]
rs2520272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2520276	0.84[EUR][1000 genomes]
rs2520278	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2520279	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2712186	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2712188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2712192	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712194	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2712203	0.94[EUR][1000 genomes]
rs2712213	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2712217	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2712223	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2712225	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28410326	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3779496	0.88[EUR][1000 genomes]
rs4588787	0.81[AMR][1000 genomes]
rs4610672	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4727682	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs4730243	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60490203	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62483724	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6466172	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6466174	0.91[EUR][1000 genomes]
rs6945488	0.88[EUR][1000 genomes]
rs6954422	0.81[CEU][hapmap]
rs6962433	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6966616	0.81[CEU][hapmap]
rs6968804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6979121	0.88[EUR][1000 genomes]
rs711442	0.81[TSI][hapmap]
rs7786186	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7787113	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7791955	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs7805630	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	esv1825788	chr7:106897237-107136320	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1024793	chr7:106900877-107170312	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv1832266	chr7:106961882-107136320	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
6	nsv1019963	chr7:107033342-107188641	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv539052	chr7:107033342-107188641	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107028200-107103800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:107035800-107133000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:107037800-107102200	Weak transcription	Ovary	ovary
4	chr7:107038800-107100600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:107050600-107102400	Weak transcription	Dnd41	blood
6	chr7:107050800-107100200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr7:107052000-107098600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr7:107052600-107126400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:107065000-107100600	Weak transcription	Thymus	Thymus
10	chr7:107067600-107119800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr7:107068200-107098400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr7:107068400-107104000	Weak transcription	Pancreas	Pancrea
13	chr7:107072400-107100000	Weak transcription	Gastric	stomach
14	chr7:107073000-107103600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr7:107076200-107099600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr7:107078400-107092400	Weak transcription	Fetal Thymus	thymus
17	chr7:107078800-107092400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:107079600-107108600	Weak transcription	Right Ventricle	heart
19	chr7:107080400-107099800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr7:107081000-107102600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr7:107081200-107103600	Weak transcription	Adipose Nuclei	Adipose
22	chr7:107082000-107100600	Weak transcription	Esophagus	oesophagus
23	chr7:107082800-107097800	Weak transcription	Fetal Intestine Small	intestine
24	chr7:107082800-107101000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr7:107082800-107104200	Weak transcription	Left Ventricle	heart
26	chr7:107082800-107109000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr7:107083400-107104200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:107083400-107104600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:107083400-107115400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr7:107084400-107109200	Weak transcription	Fetal Intestine Large	intestine
31	chr7:107085400-107101600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr7:107085800-107098200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr7:107086800-107098600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr7:107087400-107093600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr7:107087600-107092800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr7:107087600-107098400	Weak transcription	HSMM	muscle
37	chr7:107087600-107100800	Weak transcription	Spleen	Spleen
38	chr7:107087600-107103600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:107087600-107104000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr7:107087800-107097400	Weak transcription	Primary B cells from cord blood	blood
41	chr7:107087800-107103400	Weak transcription	Aorta	Aorta
42	chr7:107087800-107103600	Weak transcription	K562	blood
43	chr7:107087800-107112000	Weak transcription	NHDF-Ad	bronchial
44	chr7:107088000-107103600	Weak transcription	HSMMtube	muscle
45	chr7:107088000-107103800	Weak transcription	HMEC	breast
46	chr7:107088000-107103800	Weak transcription	NHEK	skin
47	chr7:107088200-107092400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr7:107088200-107100800	Weak transcription	Liver	Liver
49	chr7:107088600-107094600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr7:107088600-107126000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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