Variant report

Variant	rs11761775
Chromosome Location	chr7:107212966-107212967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107202798..107206022-chr7:107208738..107213225,6	MCF-7	breast:
2	chr7:107210647..107213147-chr7:107219031..107221159,5	MCF-7	breast:
3	chr7:107207110..107210037-chr7:107211935..107213568,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164597	Chromatin interaction
ENSG00000105865	Chromatin interaction
ENSG00000075790	Chromatin interaction
ENSG00000272854	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1024401	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10267978	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12534598	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12668615	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12674273	0.86[AMR][1000 genomes]
rs1468335	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2520258	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2520262	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2520270	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2520276	0.82[ASN][1000 genomes]
rs2701678	0.82[JPT][hapmap]
rs2701679	0.82[JPT][hapmap]
rs2712203	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2712227	0.81[CEU][hapmap]
rs35868979	0.85[AMR][1000 genomes]
rs3823958	0.86[AMR][1000 genomes]
rs4357220	0.84[AMR][1000 genomes]
rs4727682	0.82[CHB][hapmap];0.91[JPT][hapmap];0.82[AFR][1000 genomes]
rs4730244	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6466174	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6945488	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs711442	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv482365	chr7:107122401-107271861	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv608074	chr7:107179131-107260856	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv888940	chr7:107210383-107229618	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11761775	FABP2	trans	parietal	SCAN

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107205000-107219600	Weak transcription	Pancreas	Pancrea
2	chr7:107205000-107220000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:107205000-107220000	Weak transcription	Gastric	stomach
4	chr7:107205000-107220200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:107205000-107220200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:107205200-107219600	Weak transcription	Esophagus	oesophagus
7	chr7:107205200-107219600	Weak transcription	Right Ventricle	heart
8	chr7:107205200-107220000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:107205200-107220000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:107205200-107220000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:107205200-107220000	Weak transcription	Lung	lung
12	chr7:107205200-107220000	Weak transcription	Psoas Muscle	Psoas
13	chr7:107205400-107219800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr7:107205400-107220000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr7:107205400-107220000	Weak transcription	Colonic Mucosa	Colon
16	chr7:107205400-107220000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr7:107205600-107214000	Weak transcription	Small Intestine	intestine
18	chr7:107205600-107215200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:107205600-107215400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:107205600-107215400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr7:107205600-107219600	Weak transcription	Aorta	Aorta
22	chr7:107205600-107219600	Weak transcription	Fetal Stomach	stomach
23	chr7:107205600-107219600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:107205600-107219800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr7:107205600-107220000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr7:107205600-107220000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:107205600-107220000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr7:107205600-107220000	Weak transcription	Brain Angular Gyrus	brain
29	chr7:107205600-107220000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr7:107205600-107220000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr7:107205600-107220000	Weak transcription	Brain Substantia Nigra	brain
32	chr7:107205600-107220000	Weak transcription	Fetal Kidney	kidney
33	chr7:107205600-107220000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr7:107205600-107220000	Weak transcription	HSMMtube	muscle
35	chr7:107205800-107219600	Weak transcription	Colon Smooth Muscle	Colon
36	chr7:107205800-107219800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr7:107205800-107219800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr7:107205800-107219800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr7:107205800-107220000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr7:107205800-107220000	Weak transcription	Brain Anterior Caudate	brain
41	chr7:107205800-107220000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr7:107205800-107220000	Weak transcription	Fetal Brain Male	brain
43	chr7:107206000-107213600	Weak transcription	HSMM	muscle
44	chr7:107206000-107215400	Weak transcription	A549	lung
45	chr7:107206000-107219600	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr7:107206000-107219800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:107206000-107219800	Weak transcription	GM12878-XiMat	blood
48	chr7:107206000-107219800	Weak transcription	NHLF	lung
49	chr7:107206000-107220000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr7:107206000-107220000	Weak transcription	Thymus	Thymus

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