Variant report

Variant	rs12674273
Chromosome Location	chr7:107268612-107268613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107265932..107268646-chr7:107401473..107403463,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11761775	0.86[AMR][1000 genomes]
rs12534598	0.85[AMR][1000 genomes]
rs12668615	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2222846	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35868979	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3823958	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4357220	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs711442	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv482365	chr7:107122401-107271861	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107221200-107272000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:107221400-107272400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:107221400-107276000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:107235200-107271800	Weak transcription	Small Intestine	intestine
5	chr7:107236000-107270800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:107238000-107272000	Weak transcription	Esophagus	oesophagus
7	chr7:107255400-107271600	Weak transcription	Pancreas	Pancrea
8	chr7:107255600-107271600	Weak transcription	Brain Substantia Nigra	brain
9	chr7:107255600-107272000	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:107256200-107269600	Weak transcription	Brain Angular Gyrus	brain
11	chr7:107256400-107272800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr7:107256800-107268800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:107256800-107269000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:107256800-107271600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr7:107256800-107278600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:107257000-107269200	Weak transcription	Brain Germinal Matrix	brain
17	chr7:107257800-107270600	Weak transcription	Brain Anterior Caudate	brain
18	chr7:107257800-107271000	Weak transcription	A549	lung
19	chr7:107258200-107271800	Weak transcription	Fetal Brain Male	brain
20	chr7:107258800-107272800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:107259400-107269000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr7:107261600-107269200	Weak transcription	Right Ventricle	heart
23	chr7:107261600-107272000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr7:107261600-107273800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr7:107262200-107272200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr7:107262400-107271000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:107262400-107271200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr7:107262600-107269600	Weak transcription	Ovary	ovary
29	chr7:107262800-107269200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:107262800-107269400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr7:107263000-107268800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:107263000-107269800	Weak transcription	Colon Smooth Muscle	Colon
33	chr7:107263000-107270000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr7:107263000-107273800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr7:107263200-107269200	Weak transcription	Fetal Brain Female	brain
36	chr7:107263200-107271200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr7:107263400-107268800	Weak transcription	NHLF	lung
38	chr7:107263400-107269600	Weak transcription	Fetal Intestine Small	intestine
39	chr7:107263400-107269600	Weak transcription	Spleen	Spleen
40	chr7:107263400-107272200	Weak transcription	Fetal Heart	heart
41	chr7:107263400-107272800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr7:107263600-107268800	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr7:107263600-107268800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:107263600-107268800	Weak transcription	Gastric	stomach
45	chr7:107263600-107268800	Weak transcription	Lung	lung
46	chr7:107263600-107269000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr7:107263600-107269200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr7:107263600-107269200	Weak transcription	Aorta	Aorta
49	chr7:107263600-107269400	Weak transcription	Left Ventricle	heart
50	chr7:107263600-107269600	Weak transcription	Stomach Smooth Muscle	stomach

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